Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g367 ATGGGGAAAGGGGGGCAAGGCTATGGGAAAAGAAACCCTAATGATGCCAACACAGTTGAAATCTTCGCTGCATGGGCGAAGAATGTTAAAGAATGCGAAGAGAAGCTCCAGGTGAATCACGAATTCGGATTGTCAACGGCTGAGGTTGAAAAGCGGCGCGAGATCTATGGTTACAACGAGTTGGAGAAGCATGAGGGTCCTTCAATTTTGAGACTGATTTTGGATCAGTTCAATGACACTCTAGGTGGGGAAATGGAAATCACTGCGTTTGTAGAACCATTGGTGATTTTTTTGATCTTGATTGTGAATGCTATAGTTGGGGTTTGGCAGGAGAGTAATGCGGAGAAGGCATTAGAGGCTCTTAAGGAAATTCAATCAGAGCATGCAACAGTGATTCGGGATGGTAAAAAGGTTCCAAATTTGCCGGCAAAAGAACTTGTTCCAGGAGATATTGTTGAATTAAGGGTTGGTGATAAGGTACCTGCAGATATGCGGGTTTTGAGTTTGATAAGTTCGACTCTTCGGGTTGAGCAAGGATCCTTAACAGGAGAGAGTGAAGCCGTTAATAAGACAACTAAGGTTGTGCCAGAGGATTCAGATATTCAGGGTAAGAAGTGCATGGTTTTTGCAGGGACAACTGTGGTGAATGGAAATGGTATATGTTTGGTTACAGAGACGGGAATGAATACGGAGATAGGGAAGGTGCATTTGCAAATTCATGAAGCCTCGCAGAGTGAAGAAGATACACCTTTGAAGAAGAAGTTGAATGAGTTTGGAGAGCTTCTTACTGCCATAATTGGAGTAATTTGTGCATTGGTTTGGCTTATTAATTGCACTTATTACTTTGAAATTGCTGTGGCGTTAGCAGTGGCTGCAATTCCAGAAGGTTTGCCAGCAGTCATCACAACTTGTTTGGCGCTTGGAACAAGAAAGATGGCACAGAAGAATGCACTTGTTCGGAAGTTACCTAGTGTTGAAACTCTTGGTTGTACAACTGTAATTTGTTCTGATAAAACAGGCACTTTGACTACCAACCAAATGGCAGTTGCAAAGCTTGTGGCTATGGGCCCTAGGGTGTACACTATTGCAGCAGTGTGCAATGATGCTGATGTTGAATACTCTGGGCAACATTTTGTTGCCAATGGAATGCCCACTGAGGCAGCCTTGAAGGTTCTGGTTGAGAAAATGGGACTTCCTGAAGGATTTGATAATGGTTCATCTTTGGATAATAGCGCTGTACTCCGTTGTTCTCAACTATGGAATAAAATCGAACATCGAATTGCAACCCTTGAATTCGATCGTGATCGCAAATCCATGGGAGTTATTGTGAATTCCAGCTCAGGCAAAAAGGCATTGCTAGTGAAGGGTGCAGTAGAAAATGTGTTGGAAAGAAGCTCATATATTCAGTTGCTTGATGGTTCTATTGTAGAACTTGATAGAAAATCAAGGGATCTTATTTTACAAAGCCTTTATCAAATGTCAACAAGTGCATTACGCTGTTTGGGATTTGCATACAAGGAAGATCTTTTGGAGTTTGCAACATATAATGGAGATGAAGACCATCCAGCTCATCAGCTTCTACTTAGACCATCAAATTACTCTGTAATTGAAAGTAAACTCATTTTTGTTGGTTTGGTTGGGCTGAGGGATCCACCACGGAAAGAGGTTCGTCAAGCAATTGAAGACTGTAGAGCAGCTGGAATTCGTGTTATGGTTATTACAGGTGACAACAAGAATACAGCAGAAGCTATTTGTCGTGAAATTGGAGTTTTTGGATCTAAGGAAGACATTAGTTTAAAAAGCATAACGGGGAAAGAGTTTATGGAGCATTATGATCAGAAAACTCATTTGAGGCAAAATGGGGGCCTCCTGTTCTCTAGGGCTGAACCAAGGCATAAGCAGGAAATAGTGAGGTTGCTCAAAGAGGATAATGAGGTGGTTGCAATGACTGGTGATGGAGTGAATGATGCACCAGCCTTGAAATTGGCTGATATTGGGATTGCAATGGGCATTACTGGGACAGAGGTTGCAAAGGAAGCCTCTGACATGGTCTTGGCAGATGATAATTTTAACACAATAGTTGCTGCTGTTGGTGAAGGCAGATCCATTTACAACAATATGAAGGCTTTTATCAGGTACATGATTTCATCAAATATTGGCGAGGTTGCCTCTATATTTCTGACAGCTGCTTTAGGTATTCCAGAAGGCCTGATTCCTGTTCAGCTTCTGTGGGTGAATCTTGTCACTGATGGTCCCCCAGCAACAGCTTTGGGATTTAATCCACCTGACAAAGATATAATGAAGAAACCCCCTAGAAGAAGTGATGATTCATTGATCACTCCCTGGATTTTATTCCGCTATCTGGTGATTGGGCTCTATGTTGGAATAGCAACTGTGGGAATATTCATCATATGGTACACACATGGGACATTCCTGGGGATTGATTTGAGTGGAGATGGCCACAGTCTTGTTACCTATTCCCAACTTGCTAACTGGGACTGGAAAAATCAAAGCCATGACTCTTTCCCTCTCTGTCCTGGTTGCCATAGAGATGTTCAATTCCCTTAA 2568 42.33 MGKGGQGYGKRNPNDANTVEIFAAWAKNVKECEEKLQVNHEFGLSTAEVEKRREIYGYNELEKHEGPSILRLILDQFNDTLGGEMEITAFVEPLVIFLILIVNAIVGVWQESNAEKALEALKEIQSEHATVIRDGKKVPNLPAKELVPGDIVELRVGDKVPADMRVLSLISSTLRVEQGSLTGESEAVNKTTKVVPEDSDIQGKKCMVFAGTTVVNGNGICLVTETGMNTEIGKVHLQIHEASQSEEDTPLKKKLNEFGELLTAIIGVICALVWLINCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVAKLVAMGPRVYTIAAVCNDADVEYSGQHFVANGMPTEAALKVLVEKMGLPEGFDNGSSLDNSAVLRCSQLWNKIEHRIATLEFDRDRKSMGVIVNSSSGKKALLVKGAVENVLERSSYIQLLDGSIVELDRKSRDLILQSLYQMSTSALRCLGFAYKEDLLEFATYNGDEDHPAHQLLLRPSNYSVIESKLIFVGLVGLRDPPRKEVRQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFGSKEDISLKSITGKEFMEHYDQKTHLRQNGGLLFSRAEPRHKQEIVRLLKEDNEVVAMTGDGVNDAPALKLADIGIAMGITGTEVAKEASDMVLADDNFNTIVAAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLITPWILFRYLVIGLYVGIATVGIFIIWYTHGTFLGIDLSGDGHSLVTYSQLANWDWKNQSHDSFPLCPGCHRDVQFP* 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4827899 4834236 - Vvi6g367 Vvi6g367 787944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g367 855 Pfam Cation transporter/ATPase, N-terminus 25 81 IPR004014 -
Vvi6g367 855 SUPERFAMILY HAD-like 333 754 IPR036412 -
Vvi6g367 855 PRINTS Sodium/potassium-transporting ATPase signature 328 349 - -
Vvi6g367 855 PRINTS Sodium/potassium-transporting ATPase signature 452 470 - -
Vvi6g367 855 PANTHER CALCIUM-TRANSPORTING ATPASE 278 359 - -
Vvi6g367 855 PANTHER CALCIUM-TRANSPORTING ATPASE 15 277 - -
Vvi6g367 855 PANTHER CALCIUM-TRANSPORTING ATPASE 361 833 - -
Vvi6g367 855 SFLD p-type atpase 316 702 IPR044492 -
Vvi6g367 855 Pfam Cation transporting ATPase, C-terminus 735 813 IPR006068 -
Vvi6g367 855 Gene3D - 332 690 IPR023214 -
Vvi6g367 855 PRINTS P-type cation-transporting ATPase superfamily signature 177 191 - -
Vvi6g367 855 PRINTS P-type cation-transporting ATPase superfamily signature 335 349 - -
Vvi6g367 855 PRINTS P-type cation-transporting ATPase superfamily signature 544 555 - -
Vvi6g367 855 PRINTS P-type cation-transporting ATPase superfamily signature 566 576 - -
Vvi6g367 855 PRINTS P-type cation-transporting ATPase superfamily signature 650 669 - -
Vvi6g367 855 PRINTS P-type cation-transporting ATPase superfamily signature 674 686 - -
Vvi6g367 855 SMART Cation_ATPase_N_a_2 23 97 IPR004014 -
Vvi6g367 855 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 812 IPR023298 -
Vvi6g367 855 SUPERFAMILY Calcium ATPase, transduction domain A 126 235 IPR008250 -
Vvi6g367 855 SFLD Haloacid Dehalogenase 316 702 - -
Vvi6g367 855 ProSitePatterns E1-E2 ATPases phosphorylation site. 337 343 IPR018303 -
Vvi6g367 855 Gene3D - 345 551 IPR023299 GO:0000166
Vvi6g367 855 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 225 354 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi6g367 855 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 95 206 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi6g367 855 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 624 731 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi6g367 855 Pfam E1-E2 ATPase 124 315 - -
Vvi6g367 855 Gene3D - 59 818 - -
Vvi6g367 855 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 361 833 - -
Vvi6g367 855 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 278 359 - -
Vvi6g367 855 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 15 277 - -
Vvi6g367 855 Gene3D - 28 243 - -
Vvi6g367 855 Pfam haloacid dehalogenase-like hydrolase 332 664 - -
Vvi6g367 855 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 342 548 IPR023299 GO:0000166
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g367 Vvi8g649 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g367 K01537 - vvi:100243325 1595.1