Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g388 ATGCCGATCCCCAGAATCGCCCTCGGATCTCCGGCTGAGGCTGGCCAGGCTGATGCGCTCAAAGCCGCTCTTGCGGAGTTCATTTCCGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCAATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGGCAGTGGCTCATGCCTTCGCACTCTTTGTGGCAGTTTCAATTGCCGCCAACATTTCCGGAGGCCATGTCAACCCTGCTGTCACCTTTGGTGCTCTGGTTGGTGGACACATAACATTGTTCAGAAGCCTTTTGTACTGGATTGCCCAGTTACTTGGTTCAGTGGTTGCTTGCTTGCTTCTTAAGTTCGCAACCGGCGGATTGACAACATCAGCTTTCTCCCTATCCTCTGGCGTGAGCGCATGGAATGCACTTGTTTTCGAGATTGTCATGACCTTCGGCCTGGTTTACACTGTATACGCAACAGCCATTGACCCGAAGAAGGGCAACATCGGCATCATTGCACCCATTGCAATTGGTTTCATCGTGGGTGCCAACATCTTGGCTGGTGGTGCCTTCGATGGTGCATCCATGAACCCTGCAGTCTCCTTCGGACCTGCTGTGGTTAGCTGGACATGGTCTAACCACTGGGTCTACTGGCTCGGTCCATTTATTGGTGCTGCCATTGCTGCATTCGTTTACTCCATCTTCTACCTCAGCCCAACCACCCACGAGCAACTCCCTACCACAGATTACTGA 759 52.96 MPIPRIALGSPAEAGQADALKAALAEFISVLIFVFAGEGSGMAFNKLTDDGSSTPAGLVAAAVAHAFALFVAVSIAANISGGHVNPAVTFGALVGGHITLFRSLLYWIAQLLGSVVACLLLKFATGGLTTSAFSLSSGVSAWNALVFEIVMTFGLVYTVYATAIDPKKGNIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWSNHWVYWLGPFIGAAIAAFVYSIFYLSPTTHEQLPTTDY* 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5090704 5091994 + Vvi6g388 Vvi6g388 787965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g388 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g388 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g388 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g388 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g388 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g388 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g388 252 Gene3D Glycerol uptake facilitator protein. 5 252 IPR023271 -
Vvi6g388 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g388 252 PANTHER AQUAPORIN-8 1 252 IPR034294 -
Vvi6g388 252 SUPERFAMILY Aquaporin-like 18 244 IPR023271 -
Vvi6g388 252 PANTHER MAJOR INTRINSIC PROTEIN-RELATED 1 252 - -
Vvi6g388 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Vvi6g388 252 TIGRFAM MIP: MIP family channel proteins 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g388 252 Pfam Major intrinsic protein 16 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g388 Vvi13g244 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g388 K09873 - vvi:100250080 460.299