Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g395 ATGCCAAAGGGTGCTGGACACTTATCTGATGGGGATACAACATTTGACAACCCTTCCAGGATTGAACCAAAGCGGTCTCATCAATGGTTTGCAGATATTGCTGAACCAGGCTTGTTTCCCAACAAAAAGCAAGCAGTACATTCCACAAGCAGCAAATCAACTTCCGGAATTTCGAATGCACATGGTTCTCCATGGGAGAACACTTCTAGTTTTCATTCAGTTCCAAACCAATTCATTGACCGGTTATTTGGACCTGAGACAGCTAGGCCTGTCAATTTCACGGAAAGGAATATCTCTCCTGTTGGAACAGATGGCTCAAGAAGCAGGGACATCGATGAGCAATTTGGAAATGATTCATCTGTTGGTTTGTCTATATCTAATGCTATTGAAGACCCTGAAACATGTCTCAGCTATGGTGGAATTAGAAAAGTTAAAGTCAATCAGGTTAGGGAATCTGATAGTAGTGAGAATGCATCAAAGGGACATAGCTATGATAGGGAAATTCACAGTAATATACCCACAGTTCAGGACTATGACAGGGGGAGTGATACCAACCATGATATACCAATGGGTCACCCTTATAATAAGGGGGATGCCAATACCATATCTTTTGGTAGCTATCATGATGAACCTGATAATATCCCCTTTGCCAGGCCCATAAGCAGCTATGGCTTATATCAGTCTTCAGTTCAAATATCAGACACAGAGAGTGAAAGAGAGTTGGATGCATCAAATGCTAATGGAACTTTAAGTTCTGCGCAGTTAGCTAAATTAAGACCTGAGTCTGCTTCCAAAAATAAATCAGAATTTAAGATGTCTAAGAAAGAAGCTCCAAACAGCTTCCCGTCAAACGTCAGAACCTTGATATCAACTGGTATGCTTGATGGGGTACCTGTGAAGTATGTCTCCTTGTCACGAGAGGAGCTTCATGGAATCATAAAAGGCTCTGGCTATCTTTGTGGGTGTCAGTCATGTAATTTTAACAAGGTACTCAACGCTTATGAATTTGAGCGTCATGCTGGTTGCAAAACAAAACACCCAAATAATCACATTTACTTTGAGAATGGGAAGACTATTTATCAGATTGTCCAAGAATTAAGGAGCACCCCTGAGAGCTTGTTATTCGATGCCATTCAAACAGTGACTGGATCTCCGATTAATCAGAAGTCCTTCCGCATTTGGAAAGAATCATTTCAAGCAGCTACACGGGAGCTTAAGCGTATCTATGGAAAGGAGGAACTGAATCTATGA 1251 41.33 MPKGAGHLSDGDTTFDNPSRIEPKRSHQWFADIAEPGLFPNKKQAVHSTSSKSTSGISNAHGSPWENTSSFHSVPNQFIDRLFGPETARPVNFTERNISPVGTDGSRSRDIDEQFGNDSSVGLSISNAIEDPETCLSYGGIRKVKVNQVRESDSSENASKGHSYDREIHSNIPTVQDYDRGSDTNHDIPMGHPYNKGDANTISFGSYHDEPDNIPFARPISSYGLYQSSVQISDTESERELDASNANGTLSSAQLAKLRPESASKNKSEFKMSKKEAPNSFPSNVRTLISTGMLDGVPVKYVSLSREELHGIIKGSGYLCGCQSCNFNKVLNAYEFERHAGCKTKHPNNHIYFENGKTIYQIVQELRSTPESLLFDAIQTVTGSPINQKSFRIWKESFQAATRELKRIYGKEELNL* 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5157488 5162602 + Vvi6g395 Vvi6g395 787972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g395 416 MobiDBLite consensus disorder prediction 149 206 - -
Vvi6g395 416 PANTHER DNA-BINDING PROTEIN 186 416 - -
Vvi6g395 416 MobiDBLite consensus disorder prediction 242 261 - -
Vvi6g395 416 MobiDBLite consensus disorder prediction 1 21 - -
Vvi6g395 416 MobiDBLite consensus disorder prediction 149 167 - -
Vvi6g395 416 PANTHER DNA-BINDING PROTEIN 1 194 - -
Vvi6g395 416 PANTHER AUTOIMMUNE REGULATOR 186 416 - -
Vvi6g395 416 PANTHER AUTOIMMUNE REGULATOR 1 194 - -
Vvi6g395 416 MobiDBLite consensus disorder prediction 90 115 - -
Vvi6g395 416 MobiDBLite consensus disorder prediction 40 69 - -
Vvi6g395 416 MobiDBLite consensus disorder prediction 43 69 - -
Vvi6g395 416 MobiDBLite consensus disorder prediction 234 278 - -
Vvi6g395 416 Pfam Tify domain binding domain 311 366 IPR032308 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g395 Vvi8g621 ECH
Vvi6g395 Vvi13g255 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g395 - - vvi:100260456 820.461