Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g395 ATGCCAAAGGGTGCTGGACACTTATCTGATGGGGATACAACATTTGACAACCCTTCCAGGATTGAACCAAAGCGGTCTCATCAATGGTTTGCAGATATTGCTGAACCAGGCTTGTTTCCCAACAAAAAGCAAGCAGTACATTCCACAAGCAGCAAATCAACTTCCGGAATTTCGAATGCACATGGTTCTCCATGGGAGAACACTTCTAGTTTTCATTCAGTTCCAAACCAATTCATTGACCGGTTATTTGGACCTGAGACAGCTAGGCCTGTCAATTTCACGGAAAGGAATATCTCTCCTGTTGGAACAGATGGCTCAAGAAGCAGGGACATCGATGAGCAATTTGGAAATGATTCATCTGTTGGTTTGTCTATATCTAATGCTATTGAAGACCCTGAAACATGTCTCAGCTATGGTGGAATTAGAAAAGTTAAAGTCAATCAGGTTAGGGAATCTGATAGTAGTGAGAATGCATCAAAGGGACATAGCTATGATAGGGAAATTCACAGTAATATACCCACAGTTCAGGACTATGACAGGGGGAGTGATACCAACCATGATATACCAATGGGTCACCCTTATAATAAGGGGGATGCCAATACCATATCTTTTGGTAGCTATCATGATGAACCTGATAATATCCCCTTTGCCAGGCCCATAAGCAGCTATGGCTTATATCAGTCTTCAGTTCAAATATCAGACACAGAGAGTGAAAGAGAGTTGGATGCATCAAATGCTAATGGAACTTTAAGTTCTGCGCAGTTAGCTAAATTAAGACCTGAGTCTGCTTCCAAAAATAAATCAGAATTTAAGATGTCTAAGAAAGAAGCTCCAAACAGCTTCCCGTCAAACGTCAGAACCTTGATATCAACTGGTATGCTTGATGGGGTACCTGTGAAGTATGTCTCCTTGTCACGAGAGGAGCTTCATGGAATCATAAAAGGCTCTGGCTATCTTTGTGGGTGTCAGTCATGTAATTTTAACAAGGTACTCAACGCTTATGAATTTGAGCGTCATGCTGGTTGCAAAACAAAACACCCAAATAATCACATTTACTTTGAGAATGGGAAGACTATTTATCAGATTGTCCAAGAATTAAGGAGCACCCCTGAGAGCTTGTTATTCGATGCCATTCAAACAGTGACTGGATCTCCGATTAATCAGAAGTCCTTCCGCATTTGGAAAGAATCATTTCAAGCAGCTACACGGGAGCTTAAGCGTATCTATGGAAAGGAGGAACTGAATCTATGA 1251 41.33 MPKGAGHLSDGDTTFDNPSRIEPKRSHQWFADIAEPGLFPNKKQAVHSTSSKSTSGISNAHGSPWENTSSFHSVPNQFIDRLFGPETARPVNFTERNISPVGTDGSRSRDIDEQFGNDSSVGLSISNAIEDPETCLSYGGIRKVKVNQVRESDSSENASKGHSYDREIHSNIPTVQDYDRGSDTNHDIPMGHPYNKGDANTISFGSYHDEPDNIPFARPISSYGLYQSSVQISDTESERELDASNANGTLSSAQLAKLRPESASKNKSEFKMSKKEAPNSFPSNVRTLISTGMLDGVPVKYVSLSREELHGIIKGSGYLCGCQSCNFNKVLNAYEFERHAGCKTKHPNNHIYFENGKTIYQIVQELRSTPESLLFDAIQTVTGSPINQKSFRIWKESFQAATRELKRIYGKEELNL* 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5157488 5162602 + Vvi6g395 Vvi6g395 787972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g395 416 MobiDBLite consensus disorder prediction 149 206 - -
Vvi6g395 416 PANTHER DNA-BINDING PROTEIN 186 416 - -
Vvi6g395 416 MobiDBLite consensus disorder prediction 242 261 - -
Vvi6g395 416 MobiDBLite consensus disorder prediction 1 21 - -
Vvi6g395 416 MobiDBLite consensus disorder prediction 149 167 - -
Vvi6g395 416 PANTHER DNA-BINDING PROTEIN 1 194 - -
Vvi6g395 416 PANTHER AUTOIMMUNE REGULATOR 186 416 - -
Vvi6g395 416 PANTHER AUTOIMMUNE REGULATOR 1 194 - -
Vvi6g395 416 MobiDBLite consensus disorder prediction 90 115 - -
Vvi6g395 416 MobiDBLite consensus disorder prediction 40 69 - -
Vvi6g395 416 MobiDBLite consensus disorder prediction 43 69 - -
Vvi6g395 416 MobiDBLite consensus disorder prediction 234 278 - -
Vvi6g395 416 Pfam Tify domain binding domain 311 366 IPR032308 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g395 - - - vvi:100260456 820.461
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi6g395 Vvi8g621 ECH
Vvi6g395 Vvi13g255 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g395 . . . . . . Bma14g00490 . . . . . . . . Cpe05g00901 . . . . . . . . Cla02g01990 Cam02g2110 Cec02g2150 Cco02g2180 Clacu02g2097 . . . . . . . Csa06g01725 . Cme11g01269 . . . . . Bpe11g00777 . . Sed05g2941 Cmo02g00831 Cmo20g00463 . Cma20g00425 Car02g00597 Car20g00370 . . Bhi10g00666 Tan05g0358 Cmetu11g0841 . Hepe08g0810 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi7g89 ECH 1 558 PHD Transcription Factor Family AT1G05380 51.0 1.0e-172 604.7
Vvi8g1095 ECH 234 869 PHD Transcription Factor Family AT2G36720 50.8 5.8e-204 708.4
Vvi8g694 . 25 841 PHD Transcription Factor Family AT3G53680 56.6 8.1e-260 893.6
Vvi6g395 ECH 260 399 PHD Transcription Factor Family AT3G53680 53.2 1.4e-38 158.7
Vvi1g555 . 10 647 PHD Transcription Factor Family AT5G22260 51.7 2.5e-187 652.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004604 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 4 3 42