Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g4 ATGGACTCATCTAGTTCAATGGCCATATCCAGCATTAGAGCCAACTCAGAACACGAGTACATGAAAAGGGAGTGCCAGCCGAAAACTTGGACAGGAGGACTTCATAGAGTTCTATGTATGCAAGGTGGTGATGACGATGGAAGCTATGCCAAGAATTCTGAGGCTCCTGCATCCGCGATCACCTTATCAAAACCATTGCTCTTAACAGCTATTCAGTCCATGAAACTTTTCGTCCAGAGTGAGGAGGATTCTCTGAGAGTAGCAGACTTGGGCTGTGCAACCGGGTACAACACCTTGGCCACAATTGACATGGTCGTTGAGGGCTTGAGAGAGCGATATATTAAAGAGTGTGGCGTTGACCCTGAATTTGAGGCATTCTTTTCTGATCTCCCTTCAAATGATTTCAATTCTCTCTTCCGATCATTGGCTGCCACCTTATCCAATAACAAAGCCAAGAGATATTACGCTGCTGGTGTACCGGGATCGTTTTACAGTCGCCTCTTTCCTAAAGGGAAGCTTCATGTGGCGGTTAGCCTGAGTGCGTTACACTGGCTCTCTCAGATACCAGAGACAGTGTTAGACAAGAGATCATCAGCTTGGAACAAAGGAAGAGCGTGGATAGATGGGGCGAAAAAGGAGGTGGTTGAAGCATATGCAAAGCAGTCTGAGGAGGACTTGGAAGACTTCTTAAGATGTCGGAAAGAAGAGATTGTGGAGGGAGGAGTGCTATTTATGTTGATGGGAGGAAGGCCTGGTTCTCAGCGTCCAGACAATCAGTTGGATGATTCGGACTCGAGAGCTAAGCATCCTTTCACCTGTTCCATGGATCAGGCTTGGGAAGACCTATTAAATGAGGGATTGATAGATGAGGAGACAAGAGATGGGTTCAATATACCAGCATATATGAGGAGCATGGAGGAAGTTGAGAGGGCGATAGAGAGATGTGGTGGTTTTGAGATACAAAGAATGGAGTACCAGAGAATTGTGGAGCATTCGAAAGAGAAGCAAGATGAGTGGATCAGAGATCCAGTCTCCTATGGTAGAGCCAAAGCCAACCTGGTCCGTGCCACTCTCAGGCCTATAGTTGAGGCCCACGTTGGCCCCTACCTTTCAGAGGAGCTGTTCAAGCGCTTTGAGAACCGAGTTTCTTCTGATATTTCCCTCATCCGTAAAACTTGTTTTTATGGGGTTATTGTTGTTTGTGCAATCCGAAAATAA 1218 46.47 MDSSSSMAISSIRANSEHEYMKRECQPKTWTGGLHRVLCMQGGDDDGSYAKNSEAPASAITLSKPLLLTAIQSMKLFVQSEEDSLRVADLGCATGYNTLATIDMVVEGLRERYIKECGVDPEFEAFFSDLPSNDFNSLFRSLAATLSNNKAKRYYAAGVPGSFYSRLFPKGKLHVAVSLSALHWLSQIPETVLDKRSSAWNKGRAWIDGAKKEVVEAYAKQSEEDLEDFLRCRKEEIVEGGVLFMLMGGRPGSQRPDNQLDDSDSRAKHPFTCSMDQAWEDLLNEGLIDEETRDGFNIPAYMRSMEEVERAIERCGGFEIQRMEYQRIVEHSKEKQDEWIRDPVSYGRAKANLVRATLRPIVEAHVGPYLSEELFKRFENRVSSDISLIRKTCFYGVIVVCAIRK* 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 106475 108096 - Vvi6g4 Vvi6g4 787581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g4 405 Gene3D Vaccinia Virus protein VP39 52 329 IPR029063 -
Vvi6g4 405 PANTHER GIBBERELLIC ACID METHYLTRANSFERASE 2 37 377 - -
Vvi6g4 405 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 35 399 IPR029063 -
Vvi6g4 405 MobiDBLite consensus disorder prediction 248 267 - -
Vvi6g4 405 Pfam SAM dependent carboxyl methyltransferase 70 404 IPR005299 GO:0008168
Vvi6g4 405 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 37 377 IPR005299 GO:0008168
Vvi6g4 405 Gene3D - 37 386 IPR042086 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g4 K18886 GAMT2; gibberellin A4 carboxyl methyltransferase [EC:2.1.1.276] - vvi:100241662 811.216
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g4 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004302 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 2 2 1 3 2 2 2 42