Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g422 ATGCATGTGTGTGTGAGAGAGATAAATTTGATTACCAATAAAGTAAAAGTAGTTGAATTTTATATTTATGAGTTATACTTCCAATTGAGAAACTCTCTCAAACACGTCTTCCGCATATTCCATAAACTCATTCCCAATTTTTCCCTTTGTTCCTCTCAATTTCCCACTCCAAAAGCCTTTTATCAAATTCACTTGCTCTACACTCTCGCCGACGCTGCAGTTTCTGCCGATCCGGCTGCCGCTGGACCCGCGTCAGGCACAGCTGATGCTGCAGTGCAGAAGAACGGTGGGTGGTTCGGGTTTATTTCGGAGGGTATGGAAGTTGTTTTGAAGGTTCTGGAGGATGGCCTAACAGCAGTGCATGTTCCCTATGCATATGGATTTGCGATTATATTGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACTACAATTGCTGCTCGACAAAGTGGATCTGGCATTTCTTGGCTTATTCCGTTTGTGGATGGCCATCCACCATTGGGCTGGCAAGACACTGCAGCATACCTTGTTTTACCTGTCCTCCTTGTCATTTCTCAGTATGTTTCAATGGAGCTGATGAAGCCACCTCAGACTGATGATCCATCTCAAAAGAATACACTTCTTGTTTTCAAGTTTCTTCCACTCATGATTGGTTACTTTTCTCTATCTGTCCCATCAGGATTATCAATTTACTGGTTCACAAACAATGTACTGAGCACAGCACAACAAGTATGGTTACGCAAATTAGGTGGTGCCAAACCTGTTGTGAATGAGGATGCAAGTGGAATCATTACTGCAGGGCGTGCAAAAAGATCAGCTTCTCAGCCTGCAAGGGCTGGTGATAGGTTTAGACAACTAAAAGAAGAAGAGAAGAAGAAAAAAATAAGCAAGGCATTGCCAGCAGAAGAGATTCAGGCTCTTGCATCTGAATCTGATTCTGATGAAGGTTCAGATGAAGAGACTAAAGACAAGGGTGATGATGTTTTAGAAGAGGCATATGTTTCTAGTGGTAGCAAACAGGTTCCACAATATGCTGGACCAAGGAGAAGCAAGCGGTCAAAGCGGAAGCGTGCCGGATGA 1356 43.36 MHVCVREINLITNKVKVVEFYIYELYFQLRNSLKHVFRIFHKLIPNFSLCSSQFPTPKAFYQIHLLYTLADAAVSADPAAAGPASGTADAAVQKNGGWFGFISEGMEVVLKVLEDGLTAVHVPYAYGFAIILLTVIVKIATYPLTKKQVESTLAMQNLQPKIKAIQERYKGNQERIQLETSRLYKQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLGGPTTIAARQSGSGISWLIPFVDGHPPLGWQDTAAYLVLPVLLVISQYVSMELMKPPQTDDPSQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVNEDASGIITAGRAKRSASQPARAGDRFRQLKEEEKKKKISKALPAEEIQALASESDSDEGSDEETKDKGDDVLEEAYVSSGSKQVPQYAGPRRSKRSKRKRAG* 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5407487 5417476 - Vvi6g422 Vvi6g422 787999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g422 451 TIGRFAM yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 126 339 IPR028055 -
Vvi6g422 451 PANTHER INNER MEMBRANE PROTEIN ALBINO3, CHLOROPLASTIC 64 445 - -
Vvi6g422 451 MobiDBLite consensus disorder prediction 367 391 - -
Vvi6g422 451 MobiDBLite consensus disorder prediction 358 451 - -
Vvi6g422 451 Pfam 60Kd inner membrane protein 126 340 IPR001708 GO:0016021|GO:0032977
Vvi6g422 451 PANTHER OXA1 64 445 IPR001708 GO:0016021|GO:0032977
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g422 K03217 - vvi:100260431 692.96