Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g423 ATGAACCCTATAAACACTGTTTTTGATGCGAAGCGTTTGATTGGAAGGAGATTCAGCGATTCCTCGGTTCAGAGCGACATCAAGCTCTGGCCTTTCAAGGTCATTGCTGGTCCTGGAGACAAGCCAATGATAGTGGTCAACTACAGGGGTGAAGAGAAACAATTTTCGGCAGAAGAAATCTCGTCAATGGTGCTGATAAAGATGCGAGAGATTGCCGAGGCATACCTAGGCACGAGCATAAAAAACGCCGTCAAGAATGTGCTCATCTTCGATCTTGGTGGTGGAACATTCGATGTGTCACTCCTCACGATCGAGGAGGGCATTTTTGAGGTTAAGGCTACGGCCGGTGATACTCATCTGGGCGGTGAAGACTTTGATAACAGAATGGTGAACCATTTTGTTCAGGAGACTCTCTCCTCAACTGCACAGACTACAATTGAGATTGATTCTCTAAAATGCATGGAGCCCGACTTCTTCAATGGGAAAGAGCTGTGCAAGAGCATCAACCCTGACGAGGCAGTTGCATATGGTGCTGCAGTTCAGGCCGCCATTTTGAGTGAAACACCACCATACCCACCAAGAAGGAGCAGGACCCGTGACAACAATTTGTTGGGCAAATTCGAGCTCTCTGGTATTCCTCCTGCCCCTAGAGGTGAGGCGGAGAAGTACAAATCAGAGGACGAAGAGCACAAGAAAAAGAAAATAGAGGATGCAATTGAGCAGGCAATCCAGTGGCTGGATGCAAACCAGCTAGCAGAGGCAGATGAGTTTGAGGACAAAATGAAGGAGTTGGAGAGTCTCTGCAACCCCATCATTGCTAAGATGTACCAGGGATCTGGTGGAGGCGATTTTGGTGGGGCCATGGACGAGGATGGTCCTTCTGCTGGAGGTGCTGGTGGAAGTGGTGCAGGACCTAAGATTGAGGAGGTTGATTAG 936 48.72 MNPINTVFDAKRLIGRRFSDSSVQSDIKLWPFKVIAGPGDKPMIVVNYRGEEKQFSAEEISSMVLIKMREIAEAYLGTSIKNAVKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQETLSSTAQTTIEIDSLKCMEPDFFNGKELCKSINPDEAVAYGAAVQAAILSETPPYPPRRSRTRDNNLLGKFELSGIPPAPRGEAEKYKSEDEEHKKKKIEDAIEQAIQWLDANQLAEADEFEDKMKELESLCNPIIAKMYQGSGGGDFGGAMDEDGPSAGGAGGSGAGPKIEEVD* 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5418080 5420685 + Vvi6g423 Vvi6g423 788000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g423 311 Gene3D - 220 311 IPR029048 -
Vvi6g423 311 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 85 136 - -
Vvi6g423 311 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 1 84 - -
Vvi6g423 311 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 193 218 - -
Vvi6g423 311 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 224 288 - -
Vvi6g423 311 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 156 186 - -
Vvi6g423 311 Gene3D - 1 84 - -
Vvi6g423 311 Coils Coil 247 267 - -
Vvi6g423 311 MobiDBLite consensus disorder prediction 206 232 - -
Vvi6g423 311 ProSitePatterns Heat shock hsp70 proteins family signature 2. 89 102 IPR018181 -
Vvi6g423 311 Gene3D - 85 120 - -
Vvi6g423 311 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 221 283 IPR029048 -
Vvi6g423 311 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 187 219 IPR029047 -
Vvi6g423 311 Pfam Hsp70 protein 157 187 IPR013126 GO:0005524|GO:0140662
Vvi6g423 311 Pfam Hsp70 protein 85 138 IPR013126 GO:0005524|GO:0140662
Vvi6g423 311 Pfam Hsp70 protein 1 84 IPR013126 GO:0005524|GO:0140662
Vvi6g423 311 Gene3D - 157 168 - -
Vvi6g423 311 Gene3D Actin; Chain A, domain 4 121 143 - -
Vvi6g423 311 SUPERFAMILY Actin-like ATPase domain 85 186 IPR043129 -
Vvi6g423 311 SUPERFAMILY Actin-like ATPase domain 2 84 IPR043129 -
Vvi6g423 311 Gene3D - 169 183 - -
Vvi6g423 311 MobiDBLite consensus disorder prediction 280 311 - -
Vvi6g423 311 PANTHER HEAT SHOCK PROTEIN 70KDA 1 84 IPR013126 GO:0005524|GO:0140662
Vvi6g423 311 PANTHER HEAT SHOCK PROTEIN 70KDA 156 186 IPR013126 GO:0005524|GO:0140662
Vvi6g423 311 PANTHER HEAT SHOCK PROTEIN 70KDA 193 218 IPR013126 GO:0005524|GO:0140662
Vvi6g423 311 PANTHER HEAT SHOCK PROTEIN 70KDA 224 288 IPR013126 GO:0005524|GO:0140662
Vvi6g423 311 PANTHER HEAT SHOCK PROTEIN 70KDA 85 136 IPR013126 GO:0005524|GO:0140662
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g423 Vvi8g711 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g423 K03283 - vvi:100265651 287.345