Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g426 ATGAACCCCATTAACACTGTTTTCGATGCAAAGCGTCTAATCGGTAGGAGATTCAGTGACTCCTCTGTTCAGAGTGATATCAAGTTGTGGCCTTTTAAGGTCATCCCTGGACCTGGGGACAAGCCCATGATCGTGGTCGTCTACAAGGGAGAAGAAAAGCAGTTTGCTGCTGAGGAAATCTCTTCAATGGTTCTCATCAAGATGCGTGAAATTGCAGAAGCTTACCTTGGATCGACTGTGAAGAATGCAGTTGTCACTGTCCCGGCATACTTTAATGATTCTCAGAGACAAGCTACAAAAGATGCTGGTGTCATTGCTGGTCTCAACGTCATGCGTATTATAAACGAGCCAACAGCTGCTGCTATCGCCTATGAGGGTATTTTTGAGGTTAAAGCAACCGCCGGAGATACCCATCTTGGAGGTGAGGACTTTGACAACAGGATGGGTATTGACTTCTACTCCACTATAACCCGTGCCAGATTTGAAGAACTCAATATGGATCTCTTTAGAAAGTGTATGGAGCCTGTGGAGAAATGTTTGAGAGATGCCAAAATGGACAAGAGCACTGTTCATGATGTTGTTCTTGTTGCTGCCATTTTGAGTGGTGAGGGCAATGAGAAGGTTCAAGACTTGCTGCTGTTGGATGTCACCCCTCTCTCTCTTGGGTTGGAAACAGCTGGAGGAGTCATGACTGTTTTAATTCCAAGAAACACCACCATTCCAACCAAGAAGGAACAAGACCAGAGACAATAA 753 45.15 MNPINTVFDAKRLIGRRFSDSSVQSDIKLWPFKVIPGPGDKPMIVVVYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYEGIFEVKATAGDTHLGGEDFDNRMGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQDQRQ* 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5470019 5473553 - Vvi6g426 Vvi6g426 788003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g426 250 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 197 246 - -
Vvi6g426 250 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 1 124 - -
Vvi6g426 250 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 149 197 - -
Vvi6g426 250 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 125 148 - -
Vvi6g426 250 Gene3D - 1 139 - -
Vvi6g426 250 Gene3D Actin; Chain A, domain 4 149 171 - -
Vvi6g426 250 Gene3D - 172 196 - -
Vvi6g426 250 PANTHER HEAT SHOCK PROTEIN 70KDA 1 124 IPR013126 GO:0005524|GO:0140662
Vvi6g426 250 PANTHER HEAT SHOCK PROTEIN 70KDA 125 148 IPR013126 GO:0005524|GO:0140662
Vvi6g426 250 PANTHER HEAT SHOCK PROTEIN 70KDA 197 246 IPR013126 GO:0005524|GO:0140662
Vvi6g426 250 PANTHER HEAT SHOCK PROTEIN 70KDA 149 197 IPR013126 GO:0005524|GO:0140662
Vvi6g426 250 SUPERFAMILY Actin-like ATPase domain 124 196 IPR043129 -
Vvi6g426 250 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 200 249 IPR029047 -
Vvi6g426 250 SUPERFAMILY Actin-like ATPase domain 2 124 IPR043129 -
Vvi6g426 250 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 206 246 IPR029047 -
Vvi6g426 250 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 125 148 - -
Vvi6g426 250 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 1 124 - -
Vvi6g426 250 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 197 246 - -
Vvi6g426 250 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 149 197 - -
Vvi6g426 250 Pfam Hsp70 protein 196 247 IPR013126 GO:0005524|GO:0140662
Vvi6g426 250 Pfam Hsp70 protein 125 148 IPR013126 GO:0005524|GO:0140662
Vvi6g426 250 Pfam Hsp70 protein 1 124 IPR013126 GO:0005524|GO:0140662
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g426 Vvi8g711 ECH
Vvi6g426 Vvi13g281 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g426 K03283 - zju:107413527 408.297