Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi6g427 | ATGGTTTTCTCATCTGTTCCACTCTATCCAGATCCTTTGAACTGGCAGCAGCAACCCAATCGTCAAGAAGGAAGTGGCAATGAAAATCCCCAGCTTCCACCACCACCACCTCAGGCCGGTAGTCTGGGCTCGATTAGACCTGGTTCGATGGCTGATCGAGCACGGGTAGCTAAGATACCACAACCAGAGACAGCACTGAAGTGTCCCAGATGCGAATCGACCAATACTAAGTTTTGCTACTTCAATAATTATAGTCTCACACAGCCCCGCCACTTCTGTAAAACATGTCGACGATACTGGACGAGAGGAGGTGCCCTTAGGAATGTTCCGGTGGGTGGAGGATGCCGTAGAAACAAGAAAAGCAAAAGCAGTAGCTCGAAGTCGCCAGCTTCTACTGAAAGGCATGCTGGTTCGAACTCGACCATAGGTTTGTCCGCAGAAGGAGTGGAGCAGTGGCGTTTGCAACAGGTTCAGCAATTTCCTTTCTTGGGTAGCTTTGAGCCACCAACAGGTTTGTACCCATTTCAAAATGAAGATCTGACTGCAGTGAAATTGCTAGAAAACCAAGGGCTAAACTTGTCAAGGCAGTTCTTGGATACTTCAGAAAATAATCAGTATTGGGTTGGAAATGCGTGGACGGATTTCTCTGGTCTCAACTCTTCCTCCACTAGCAATCGCTTATAA | 684 | 47.66 | MVFSSVPLYPDPLNWQQQPNRQEGSGNENPQLPPPPPQAGSLGSIRPGSMADRARVAKIPQPETALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKSKSSSSKSPASTERHAGSNSTIGLSAEGVEQWRLQQVQQFPFLGSFEPPTGLYPFQNEDLTAVKLLENQGLNLSRQFLDTSENNQYWVGNAWTDFSGLNSSSTSNRL* | 228 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 5491930 | 5493551 | + | Vvi6g427 | Vvi6g427 | 788004 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi6g427 | 227 | PANTHER | DOF ZINC FINGER PROTEIN DOF3.6 | 5 | 145 | - | - | |
Vvi6g427 | 227 | PANTHER | DOF ZINC FINGER PROTEIN DOF3.6 | 146 | 223 | - | - | |
Vvi6g427 | 227 | Pfam | Dof domain, zinc finger | 65 | 120 | IPR003851 | GO:0003677|GO:0006355 | |
Vvi6g427 | 227 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Vvi6g427 | 227 | MobiDBLite | consensus disorder prediction | 124 | 140 | - | - | |
Vvi6g427 | 227 | MobiDBLite | consensus disorder prediction | 10 | 28 | - | - | |
Vvi6g427 | 227 | MobiDBLite | consensus disorder prediction | 110 | 140 | - | - | |
Vvi6g427 | 227 | ProSiteProfiles | Zinc finger Dof-type profile. | 66 | 120 | IPR003851 | GO:0003677|GO:0006355 | |
Vvi6g427 | 227 | ProSitePatterns | Zinc finger Dof-type signature. | 68 | 104 | IPR003851 | GO:0003677|GO:0006355 | |
Vvi6g427 | 227 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 5 | 145 | IPR045174 | GO:0003700|GO:0006355 | |
Vvi6g427 | 227 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 146 | 223 | IPR045174 | GO:0003700|GO:0006355 |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14942 | PF02701 | zf-Dof | 1.70E-32 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi6g427 | - | - | vvi:100246640 | 280.026 |