Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g427 ATGGTTTTCTCATCTGTTCCACTCTATCCAGATCCTTTGAACTGGCAGCAGCAACCCAATCGTCAAGAAGGAAGTGGCAATGAAAATCCCCAGCTTCCACCACCACCACCTCAGGCCGGTAGTCTGGGCTCGATTAGACCTGGTTCGATGGCTGATCGAGCACGGGTAGCTAAGATACCACAACCAGAGACAGCACTGAAGTGTCCCAGATGCGAATCGACCAATACTAAGTTTTGCTACTTCAATAATTATAGTCTCACACAGCCCCGCCACTTCTGTAAAACATGTCGACGATACTGGACGAGAGGAGGTGCCCTTAGGAATGTTCCGGTGGGTGGAGGATGCCGTAGAAACAAGAAAAGCAAAAGCAGTAGCTCGAAGTCGCCAGCTTCTACTGAAAGGCATGCTGGTTCGAACTCGACCATAGGTTTGTCCGCAGAAGGAGTGGAGCAGTGGCGTTTGCAACAGGTTCAGCAATTTCCTTTCTTGGGTAGCTTTGAGCCACCAACAGGTTTGTACCCATTTCAAAATGAAGATCTGACTGCAGTGAAATTGCTAGAAAACCAAGGGCTAAACTTGTCAAGGCAGTTCTTGGATACTTCAGAAAATAATCAGTATTGGGTTGGAAATGCGTGGACGGATTTCTCTGGTCTCAACTCTTCCTCCACTAGCAATCGCTTATAA 684 47.66 MVFSSVPLYPDPLNWQQQPNRQEGSGNENPQLPPPPPQAGSLGSIRPGSMADRARVAKIPQPETALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKSKSSSSKSPASTERHAGSNSTIGLSAEGVEQWRLQQVQQFPFLGSFEPPTGLYPFQNEDLTAVKLLENQGLNLSRQFLDTSENNQYWVGNAWTDFSGLNSSSTSNRL* 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5491930 5493551 + Vvi6g427 Vvi6g427 788004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g427 227 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 5 145 - -
Vvi6g427 227 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 146 223 - -
Vvi6g427 227 Pfam Dof domain, zinc finger 65 120 IPR003851 GO:0003677|GO:0006355
Vvi6g427 227 MobiDBLite consensus disorder prediction 1 47 - -
Vvi6g427 227 MobiDBLite consensus disorder prediction 124 140 - -
Vvi6g427 227 MobiDBLite consensus disorder prediction 10 28 - -
Vvi6g427 227 MobiDBLite consensus disorder prediction 110 140 - -
Vvi6g427 227 ProSiteProfiles Zinc finger Dof-type profile. 66 120 IPR003851 GO:0003677|GO:0006355
Vvi6g427 227 ProSitePatterns Zinc finger Dof-type signature. 68 104 IPR003851 GO:0003677|GO:0006355
Vvi6g427 227 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 145 IPR045174 GO:0003700|GO:0006355
Vvi6g427 227 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 146 223 IPR045174 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g427 - - - vvi:100246640 280.026
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi6g427 Vvi13g300 ECH
Vvi6g427 Vvi8g716 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g427 . Blo03g01238 . . . Bpe08g01366 Bma14g00500 Bma07g01538 Cmo13g00132 . Cma01g00595 Cma13g00133 Car01g00540 Car13g00103 Sed08g2509 Cpe05g00913 Cpe20g00813 Bhi08g00258 Tan01g2611 Cmetu12g0765 . Hepe10g1082 . . Cla02g01976 Cam02g2096 Cec02g2134 Cco02g2164 Clacu02g2084 Cmu02g2021 Cre02g2330 Cone1ag0649 Cone5ag1158 . . Lsi02g01364 Csa06g01499 Chy11g01243 Cme11g01283 . . . Bda09g00153 . . . . Sed01g0886 . Cmo20g00451 Cma02g00812 . Car02g00587 . . . Bhi10g00686 Tan05g0376 Cmetu11g2570 . Hepe10g1221 . . Cla03g00153 Cam03g0159 Cec03g0158 Cco03g0165 Clacu03g0162 Cmu03g0779 Cre03g0474 . Csa01g02399 Chy12g00184 Cme12g00200
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi10g214 . 21 174 C2C2-Dof Transcription Factor Family AT1G29160 58.4 3.5e-48 188.3
Vvi2g209 ECH 1 88 C2C2-Dof Transcription Factor Family AT1G64620 76.3 2.1e-39 160.2
Vvi10g214 . 21 174 C2C2-Dof Transcription Factor Family AT2G34140 58.0 3.8e-47 184.9
Vvi6g427 ECH 1 118 C2C2-Dof Transcription Factor Family AT2G37590 59.6 4.3e-39 159.1
Vvi13g300 ECH 1 128 C2C2-Dof Transcription Factor Family AT2G37590 64.5 2.1e-38 156.8
Vvi2g209 ECH 1 89 C2C2-Dof Transcription Factor Family AT4G24060 78.4 6.6e-43 171.8
Vvi17g562 ECH 111 331 C2C2-Dof Transcription Factor Family AT5G62430 50.9 7.5e-59 224.6
Vvi6g427 ECH 1 118 C2C2-Dof Transcription Factor Family AT5G02460 59.9 1.2e-40 164.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007574 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14942 PF02701 zf-Dof 1.70E-32 No_clan Vvi TF