Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g427 ATGGTTTTCTCATCTGTTCCACTCTATCCAGATCCTTTGAACTGGCAGCAGCAACCCAATCGTCAAGAAGGAAGTGGCAATGAAAATCCCCAGCTTCCACCACCACCACCTCAGGCCGGTAGTCTGGGCTCGATTAGACCTGGTTCGATGGCTGATCGAGCACGGGTAGCTAAGATACCACAACCAGAGACAGCACTGAAGTGTCCCAGATGCGAATCGACCAATACTAAGTTTTGCTACTTCAATAATTATAGTCTCACACAGCCCCGCCACTTCTGTAAAACATGTCGACGATACTGGACGAGAGGAGGTGCCCTTAGGAATGTTCCGGTGGGTGGAGGATGCCGTAGAAACAAGAAAAGCAAAAGCAGTAGCTCGAAGTCGCCAGCTTCTACTGAAAGGCATGCTGGTTCGAACTCGACCATAGGTTTGTCCGCAGAAGGAGTGGAGCAGTGGCGTTTGCAACAGGTTCAGCAATTTCCTTTCTTGGGTAGCTTTGAGCCACCAACAGGTTTGTACCCATTTCAAAATGAAGATCTGACTGCAGTGAAATTGCTAGAAAACCAAGGGCTAAACTTGTCAAGGCAGTTCTTGGATACTTCAGAAAATAATCAGTATTGGGTTGGAAATGCGTGGACGGATTTCTCTGGTCTCAACTCTTCCTCCACTAGCAATCGCTTATAA 684 47.66 MVFSSVPLYPDPLNWQQQPNRQEGSGNENPQLPPPPPQAGSLGSIRPGSMADRARVAKIPQPETALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKSKSSSSKSPASTERHAGSNSTIGLSAEGVEQWRLQQVQQFPFLGSFEPPTGLYPFQNEDLTAVKLLENQGLNLSRQFLDTSENNQYWVGNAWTDFSGLNSSSTSNRL* 228
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 5491930 5493551 + Vvi6g427 Vvi6g427 788004
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g427 227 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 5 145 - -
Vvi6g427 227 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 146 223 - -
Vvi6g427 227 Pfam Dof domain, zinc finger 65 120 IPR003851 GO:0003677|GO:0006355
Vvi6g427 227 MobiDBLite consensus disorder prediction 1 47 - -
Vvi6g427 227 MobiDBLite consensus disorder prediction 124 140 - -
Vvi6g427 227 MobiDBLite consensus disorder prediction 10 28 - -
Vvi6g427 227 MobiDBLite consensus disorder prediction 110 140 - -
Vvi6g427 227 ProSiteProfiles Zinc finger Dof-type profile. 66 120 IPR003851 GO:0003677|GO:0006355
Vvi6g427 227 ProSitePatterns Zinc finger Dof-type signature. 68 104 IPR003851 GO:0003677|GO:0006355
Vvi6g427 227 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 145 IPR045174 GO:0003700|GO:0006355
Vvi6g427 227 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 146 223 IPR045174 GO:0003700|GO:0006355
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Vvi6g427 Vvi13g300 ECH
Vvi6g427 Vvi8g716 ECH
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14942 PF02701 zf-Dof 1.70E-32 No_clan Vvi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g427 - - vvi:100246640 280.026