Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g428 ATGGAAGAAGCAAAAGGAGCTCCAGTACAGGAGCTGATCGATACAGTTAGTAAGATATCGTCAATCTCAGATTACAGATGTACGGTCAGGAAAGAGTATTGTAATCTGGCAAGAAGGTTGAAGCTGTTGATTCCAATGTTTGAAGAGATTCGGGACAGTAAAGAGCCGATTCCAGAGGAGTCGTTGAAAGCCCTAGTCTCGTTGAAGGAGGCTCTGGAGTCAGCTAAAGAGTTGCTCAGATTTGGTAGTGAAGGGAGCAAGATTTTCATGGTCCTAGAAAGAGAGCAAGTTGTCTCCAAATTCCACGAAGTGACTGCTAATCTGGAACAAGCTTTGAGCGGAATCTCATTTGAAAAACTTGACATAACAGACGAAGTTAAGGAACAGGTTGAGCTAGTTCTCTCTCAGTTCAGAAGAGCCAAAGGAAGGGCTGATGCAACTGATGCTGAGCTGTATGAGGATCTTGTGTCCCTTTATAACAAGAGCACTGATGCAGCTACAGACCCAGCTGTCTTAAGGAGGTTGGCTGAGAAGTTGCAATTAATGCAAATAGATGATCTCACACAAGAATCACTGGCTCTGCATGAAATGGTCACTGCCAGCAGTGCAGATCCTGGAGAGAGCATCGAGAAGATGTCAATGCTATTGAAGAAAATTAAGGATTTTGTGCAGACTGAAAATCCAGACTTGACTGCTACACATGGAAAGTCCCTTCCTTCAAGTTGCAGCGGGCAAATATCTACCGATGGGAATCACAAGTCCCCAGTTATTCCAGATGATTTTCGTTGTCCGATATCCCTGGAGCTAATGAACGATCCTGTCATTGTTTCAACAGGGCAGACCTATGAACGTTCCTGCATCGAGAAATGGCTGGAAGCAGGACATGGCACATGTCCAAAGACACAACAGACCCTCTCTAGCCAGGCCCTCACACCAAACTATGTCTTGCGTAGCCTCATAGCACAGTGGTGCGAGTCTAATGGGATCGAGCCACCAAAAAGACCCAGCACTTCGATCTGGCAGCCCTGA 1029 45.87 MEEAKGAPVQELIDTVSKISSISDYRCTVRKEYCNLARRLKLLIPMFEEIRDSKEPIPEESLKALVSLKEALESAKELLRFGSEGSKIFMVLEREQVVSKFHEVTANLEQALSGISFEKLDITDEVKEQVELVLSQFRRAKGRADATDAELYEDLVSLYNKSTDAATDPAVLRRLAEKLQLMQIDDLTQESLALHEMVTASSADPGESIEKMSMLLKKIKDFVQTENPDLTATHGKSLPSSCSGQISTDGNHKSPVIPDDFRCPISLELMNDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQTLSSQALTPNYVLRSLIAQWCESNGIEPPKRPSTSIWQP* 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5497869 5504259 - Vvi6g428 Vvi6g428 788005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g428 342 SUPERFAMILY RING/U-box 251 333 - -
Vvi6g428 342 MobiDBLite consensus disorder prediction 230 253 - -
Vvi6g428 342 Pfam U-box domain 257 327 IPR003613 GO:0004842|GO:0016567
Vvi6g428 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 330 IPR013083 -
Vvi6g428 342 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 337 - -
Vvi6g428 342 ProSiteProfiles U-box domain profile. 256 330 IPR003613 GO:0004842|GO:0016567
Vvi6g428 342 PANTHER U BOX DOMAIN-CONTAINING 6 337 - -
Vvi6g428 342 SMART Ubox_2 260 323 IPR003613 GO:0004842|GO:0016567
Vvi6g428 342 MobiDBLite consensus disorder prediction 230 252 - -
Vvi6g428 342 CDD RING-Ubox_PUB 261 303 IPR045210 -
Vvi6g428 342 Gene3D - 7 118 IPR036537 GO:0007166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g428 - - vvi:100258708 653.669