Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g432 ATGGCAGAAGAAGATATTCAGCCACTTGTCTGCGATAATGGTACCGGAATGGTTAAGGCCGGATTTGCAGGAGATGATGCTCCAAGGGCTGTGTTTCCTAGTATTGTGGGTCGTCCACGGCACACTGGTGTGATGGTTGGGATGGGCCAGAAAGATGCATATGTGGGGGATGAGGCTCAGTCCAAGCGTGGTATATTAACTCTGAAATACCCAATTGAGCATGGCATTGTGAGCAACTGGGATGACATGGAGAAGATATGGCATCATACCTTCTACAATGAACTCAGAGTGGCTCCGGAAGAACACCCAGTTCTACTTACTGAAGCTCCTCTCAACCCAAAGGCTAATCGTGAAAAAATGACCCAAATCATGTTTGAAACCTTCAATGCCCCTGCTATGTATGTTGCCATCCAGGCTGTTCTTTCCCTCTATGCCAGTGGACGTACAACTGGTATTGTTCTGGACTCTGGAGATGGTGTCAGTCACACTGTCCCCATCTATGAGGGATATGCTCTTCCACATGCTATCCTACGTCTTGACCTGGCTGGTCGTGATCTCACTGATGCACTTATGAAAATCCTGACTGAGCGTGGCTACTCCTTCACCACCACAGCTGAGCGCGAAATTGTGAGGGACGTAAAGGAGAAGTTGGCATACATTGCCCTTGACTACGAACAGGAGCTGGAGACAGCCAAAACTAGTTCCTCTGTTGAGAAGAGCTATGAGTTGCCTGATGGACAGATGATCACCATTGGTGCTGAGCGTTTCCGATGCCCAGAAGTCCTGTTCCAACCATCCATGATTGGAATGGAGGCTGCAGGCATTCATGAAACTACTTACAACTCCATCATGAAGTGTGATGTTGATATCAGAAAAGATCTATATGGAAACATTGTCCTCAGTGGTGGATCAACCATGTTCCCAGGCATTGCAGACAGGATGAGCAAGGAAATCACTGCATTAGCCCCAAGCAGCATGAAGATCAAGGTGGTGGCTCCTCCTGAGAGGAAGTATAGCGTATGGATTGGAGGCTCCATCTTAGCATCACTCAGCACTTTCCAGCAGATGTGGATAGCAAAGGCAGAGTATGATGAATCTGGGCCATCTATTGTGCATAGGAAATGCTTCTAA 1131 47.66 MAEEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETAKTSSSVEKSYELPDGQMITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF* 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5548567 5552191 + Vvi6g432 Vvi6g432 788009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g432 376 SMART actin_3 6 376 IPR004000 -
Vvi6g432 376 PANTHER ACTIN 3 375 IPR004000 -
Vvi6g432 376 PANTHER ACTIN 3 3 375 - -
Vvi6g432 376 Gene3D - 9 370 - -
Vvi6g432 376 SUPERFAMILY Actin-like ATPase domain 148 376 IPR043129 -
Vvi6g432 376 Pfam Actin 4 376 IPR004000 -
Vvi6g432 376 ProSitePatterns Actins and actin-related proteins signature. 105 117 IPR020902 -
Vvi6g432 376 CDD NBD_sugar-kinase_HSP70_actin 9 182 - -
Vvi6g432 376 PRINTS Actin signature 27 36 IPR004000 -
Vvi6g432 376 PRINTS Actin signature 50 61 IPR004000 -
Vvi6g432 376 PRINTS Actin signature 62 84 IPR004000 -
Vvi6g432 376 PRINTS Actin signature 116 129 IPR004000 -
Vvi6g432 376 PRINTS Actin signature 141 160 IPR004000 -
Vvi6g432 376 PRINTS Actin signature 237 253 IPR004000 -
Vvi6g432 376 ProSitePatterns Actins signature 2. 357 365 IPR004001 -
Vvi6g432 376 Gene3D Actin; Chain A, domain 4 181 272 - -
Vvi6g432 376 ProSitePatterns Actins signature 1. 54 64 IPR004001 -
Vvi6g432 376 SUPERFAMILY Actin-like ATPase domain 5 154 IPR043129 -
Vvi6g432 376 Gene3D - 139 339 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g432 K10355 - vvi:100246726 754.977