Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g436 ATGGGTAACGGTTTCGCGAAGCTAAGCATCTGCTTCACCGGCGAGGGAGGAGCTCGCCGGAGGCAGGATATATCTGTTTTGATATCGGACCCTCTTGATGAAGGTTTGGGTCACTCTTTCTGCTACATCAGACCTGACCAGTCTCGGCTCTCATCTTCCAAGGTTCACTCTGAAGAAACCACCACCTTCCGATCAATCTCAGGCGCTTCTGTAAGTGCCAACACATCAACTCCTCTCTCTACAGCCTTTGTAGATCTCTATTCTTACAATAGTATTGATCGAGCCTCGGCTTTCGAGAGCTCAACGTCGTTTACTTCCATTCCTCTGCAACCAATTCCCCGAAATTGGATGAATTCTGGCCCAATACCGGGAAGTCCTCTTGAAAAGAGCAGTACTGATCAGTTTCAGAGGAGTTATTCTCATGGTGGGTTTGCTTTTAGACCCAGATCGAGGAAAGGGTCACTGATTCGTGTTCTTCAGAGAGCAATATCTAAGACGATATCGCGTGGCCAGAACTCGATTGTGGCTCCAATTAAAGGCGTTGTTTCGGTAAAAGAACCGGATTGGCTTGTTGGGTCGGAAAAGCACAATGAGAATCTCACTGTGAGTAGTGTGAATTTGAGCAGTGATGGGAGTTTGGAGGATGATGATTCGCTAGAGAGTCAGAATCTTCAATGGGCTCAAGGGAAAGCAGGGGAGGATCGAGTTCATGTCGTGGTTTCGGAGGAGCATGGCTGGGTTTTTGTAGGGATTTATGATGGATTCAACGGCCCTGATGCACCTGATTATTTATTATCCAATTTATACTCTGCTGTTCACAAGGAGCTCAAGGGTTTGTTATGGGATGACAAGCATGAATCCAATCCAAGAAAGAAGGGTAAGAATTCGAAGAACAAGTACAAGGGTGCAGCAAAGAAATGGGAGGAGAATCAGAGGAGGTGGAAGTGTGAGTGGGACAGGGAGAGATTAGAGCTCGATCGAAGGTTAAAGGAGCAATTGAATGGATCTAATACCGATGGCTCGAGATCTATTAACCATTCAGATGTATTGAAAGCTCTGTCTCAAGCCTTGAGAAAAACAGAGGAGTCGTATTTGGAAATAGCTGATAAGATGGTTATGGAAAATCCGGAGCTGGCCCTCATGGGATCTTGTGTTCTTGTAATGCTGATGAAGGGGGAGGATGTTTATGTGATGAATGTGGGTGATAGTCGAGCAGTTTTAGCTCAGAAGGCGGAGGCTGATGTCTGGCTTGGGAAGATCCGGCAGGACTTGGAAAGGATCAATGAAGAAACATTGCATGATCTTGAAGCGATGGACAATGATAACTCCAACATGATTCCTACTTTATCTGCTTTTCAGCTTACTGTGGACCACAGCACCAGTGTGGAGGAGGAAGTTCGGAGAATAAAAAATGAACACCCTGATGATGCTTGTGCAGTGATGAATGATCGTGTGAAAGGTTCATTGAAAGTCACTCGAGCTTTTGGGGCGGGTTTTCTCAAACAGCCTAAATGGAACAATGCACTTCTAGAGATGTTCAGAATAGACTATGTTGGCACCTCTCCATACATCAGCTGTCTCCCATCTCTTTACCACCACAGATTAGGCCCAGAAGATAGGTTTTTGATATTATCATCTGATGGTTTATATCAATACTTGACAAATGAAGAGGCTGTTTCTGAAGTTGAACTTTTCATCGCATTATCCCCTGATGGAGATCCTGCACAGCATCTGGTCGAGGAAGTGCTGTTTCGTGCAGCAAAAAAAGCTGGTATGGACTTCCATGAGCTGCTTGAAATACCACAAGGGGATAGACGACGGTACCATGATGATGTTTCGATTATTGTTATTTCATTGGAGGGCATGATATGGAGATCATGTGTATAA 1887 44.99 MGNGFAKLSICFTGEGGARRRQDISVLISDPLDEGLGHSFCYIRPDQSRLSSSKVHSEETTTFRSISGASVSANTSTPLSTAFVDLYSYNSIDRASAFESSTSFTSIPLQPIPRNWMNSGPIPGSPLEKSSTDQFQRSYSHGGFAFRPRSRKGSLIRVLQRAISKTISRGQNSIVAPIKGVVSVKEPDWLVGSEKHNENLTVSSVNLSSDGSLEDDDSLESQNLQWAQGKAGEDRVHVVVSEEHGWVFVGIYDGFNGPDAPDYLLSNLYSAVHKELKGLLWDDKHESNPRKKGKNSKNKYKGAAKKWEENQRRWKCEWDRERLELDRRLKEQLNGSNTDGSRSINHSDVLKALSQALRKTEESYLEIADKMVMENPELALMGSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEADVWLGKIRQDLERINEETLHDLEAMDNDNSNMIPTLSAFQLTVDHSTSVEEEVRRIKNEHPDDACAVMNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYVGTSPYISCLPSLYHHRLGPEDRFLILSSDGLYQYLTNEEAVSEVELFIALSPDGDPAQHLVEEVLFRAAKKAGMDFHELLEIPQGDRRRYHDDVSIIVISLEGMIWRSCV* 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5570829 5573899 - Vvi6g436 Vvi6g436 788013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g436 628 Coils Coil 421 441 - -
Vvi6g436 628 Gene3D - 194 623 IPR036457 -
Vvi6g436 628 MobiDBLite consensus disorder prediction 284 304 - -
Vvi6g436 628 Pfam Protein phosphatase 2C 338 570 IPR001932 -
Vvi6g436 628 PANTHER - 12 120 - -
Vvi6g436 628 PANTHER - 140 283 - -
Vvi6g436 628 PANTHER - 302 628 - -
Vvi6g436 628 ProSiteProfiles PPM-type phosphatase domain profile. 216 619 IPR001932 -
Vvi6g436 628 SUPERFAMILY PP2C-like 230 620 IPR036457 -
Vvi6g436 628 SMART PP2C_4 217 617 IPR001932 -
Vvi6g436 628 CDD PP2Cc 230 619 IPR001932 -
Vvi6g436 628 PANTHER PROTEIN PHOSPHATASE 2C 12 120 IPR015655 GO:0004722|GO:0006470
Vvi6g436 628 PANTHER PROTEIN PHOSPHATASE 2C 140 283 IPR015655 GO:0004722|GO:0006470
Vvi6g436 628 PANTHER PROTEIN PHOSPHATASE 2C 302 628 IPR015655 GO:0004722|GO:0006470
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g436 Vvi8g726 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g436 - - zju:107411109 997.653