Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g458 ATGGGAGCCCTCCCTCAACAGCAATTCTCACCTTTATCTCAACACCTTAGCATCCTTGAGGATGCTCTAGGGGGCAGTTCACCGGAGGACTCTCTGGTAAGAAGCTACGGAAGGAGTTTCAATGGATTTGCAGCCAAGCTCACAGAACAAGAACGAGAAAAATTGGCTAGTAAGGAGGAAGTGGTGTCTGTTTTCCCAAGTGGAATCCTTCAACTTCACACCACAAGATCTTGGGATTTTATGGGTTTCCCTCAGACTGTAAAACGAGTTCCAAGTATTGAGAGTGATATTATCATCGGTGTTCTTGATACTGGTATCTGGCCTGAATCAAAAAGCTTTAGTGATGAGGGTTTGGGCCCTGTCCCAAAAAAATGGAAAGGTTCTTGTAAAGGTGGACAAAATTTCACTTGCAACAAGAAGATAATTGGAGCTCGAGTATACAACTCGATGATATCTCCGGATAATACTGCAAGAGACAGTGAGGGTCATGGAACCCACACTGCCTCCACCGCAGCCGGAAGCGTAGTAAAGGGTGCGAGTTTTTATGGAGTGGGTAAAGGAGATGCAAGAGGAGGAGTTCCTTCTGCAAGGATTGCCGTATACAAAGTGTGTTACGAAACAGGGTGCACGGTGGCAGATGTGATGGCTGCCTTCGATGATGCTATTTCTGATGGGGTTGACATAATTACGGTTTCACTTGGAGCAGCTGCAGCATTGCCTTTGGACTCCGATTCCATTGGAATTGGCGCTTTCCATGCTATGGCAAAGGGTATTTTAACCTTGAATTCTGCAGGAAATAATGGTCCTGTCCCAGTATCAGTAAGCAGCGTTGCACCATGGATGGTCAGCGTAGCAGCCAGCACCACTGATCGCAGAATCATCGGCGAGGTTGTTCTTGGAAATGGAGTTACTGTGGAGGGTATTGCCATTAATTCTTTTGAGTTGAATGGAACTAACCATCCTATTGTATATGGAAAGACCGCTAGTACATGTGATAAACAAAATGCCGAGATTTGCAGGCCCTCGTGCTTAAACGAGGATTTGTCGAAGGGAAAGATTGTGCTGTGTAAAAACAATCCACAAATATATGTAGAAGCTAGTAGGGTTGGTGCCCTTGGGACAATCACGCTAGCCCAGGAATACCAAGAAAAAGTTCCATTCATCGTCCCTGTACCCATGACAACTTTGACTCGTCCGGACTTTGAGAAGGTGGAGGCCTACATCAATTCCACAAAAAAGCCTAAAGCAAACATACTGAAAAGTGAATCCCTCAACGACACTTCTGCCCCGGTTGTGGCCTTCTTTTCATCACGAGGGCCTAACAGAATCGTACCAGATTTTTTGAAGCCAGATATAACCGCCCCCGGTGTTGATATCTTAGCTGCATTTTCCCCGATTGCTCCTATTTCGGACACTGATGAAGATGACAGGAGGGTGAACTACAATTTCTTATCAGGAACCTCCATGTCTTGCCCCCATGCTGCTGCAGTTGCTGCTTATGTCAAGTCCTTTCACCCTACCTGGTCTCCTTCCGCCATCAAATCCGCTATTATGACTACCGCCCAGAGACTGGACCCCTCCAACAACCCAGATGGCGAACTCGCCTATGGATCTGGCCATATCGATCCTGTAAAAGCTAGAAGTCCGGGTTTAGTGTACGATGCCTCCAAAGAAGACTACATTAAAATGATGTGCACCATGGGATATGACACAAATCAAGTGAGGCTCATATCAGGAGACAACAGCACTAGTTGTCCTAAGGATGGTAAAGGCTCTCCAAGGGATCTCAATTATCCTTCAATGGCAGCTAAAGTTGACCCAAAAAAGCCTTTCGCAGTGAAGTTTCCAAGGACTGTTACAAACGTTGGCTTTGCAAATTCCACTTACAAAGCAAAGATCAGAATCAGGAGTCGCCATATAAAGGTCCAAGTGAATCCTTCCACCCTCTCTTTCAAATCATTGAACGAGACAAAATCTTTTCTTGTGACTGTTACCGGAGACGGACTAAACTTCGAAAAGGATCCGACTGCGTCTGCATCGCTGGCTTGGTCCGATGGCAATCATCACGTGAGGAGTCCCATTTTCGTGTATGTACTCAAGGATGGATTTTAA 2112 45.88 MGALPQQQFSPLSQHLSILEDALGGSSPEDSLVRSYGRSFNGFAAKLTEQEREKLASKEEVVSVFPSGILQLHTTRSWDFMGFPQTVKRVPSIESDIIIGVLDTGIWPESKSFSDEGLGPVPKKWKGSCKGGQNFTCNKKIIGARVYNSMISPDNTARDSEGHGTHTASTAAGSVVKGASFYGVGKGDARGGVPSARIAVYKVCYETGCTVADVMAAFDDAISDGVDIITVSLGAAAALPLDSDSIGIGAFHAMAKGILTLNSAGNNGPVPVSVSSVAPWMVSVAASTTDRRIIGEVVLGNGVTVEGIAINSFELNGTNHPIVYGKTASTCDKQNAEICRPSCLNEDLSKGKIVLCKNNPQIYVEASRVGALGTITLAQEYQEKVPFIVPVPMTTLTRPDFEKVEAYINSTKKPKANILKSESLNDTSAPVVAFFSSRGPNRIVPDFLKPDITAPGVDILAAFSPIAPISDTDEDDRRVNYNFLSGTSMSCPHAAAVAAYVKSFHPTWSPSAIKSAIMTTAQRLDPSNNPDGELAYGSGHIDPVKARSPGLVYDASKEDYIKMMCTMGYDTNQVRLISGDNSTSCPKDGKGSPRDLNYPSMAAKVDPKKPFAVKFPRTVTNVGFANSTYKAKIRIRSRHIKVQVNPSTLSFKSLNETKSFLVTVTGDGLNFEKDPTASASLAWSDGNHHVRSPIFVYVLKDGF* 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5757472 5760369 - Vvi6g458 Vvi6g458 788035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g458 703 Pfam Fibronectin type-III domain 595 696 IPR041469 -
Vvi6g458 703 Pfam Subtilase family 95 537 IPR000209 GO:0006508|GO:0008236
Vvi6g458 703 PANTHER SUBTILISIN-LIKE PROTEASE SBT4.3 1 698 - -
Vvi6g458 703 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 1 698 IPR045051 -
Vvi6g458 703 CDD Peptidases_S8_3 70 521 IPR034197 -
Vvi6g458 703 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 1 73 IPR037045 -
Vvi6g458 703 CDD PA_subtilisin_like 297 418 - -
Vvi6g458 703 Gene3D Peptidase S8/S53 domain 96 560 IPR036852 GO:0004252|GO:0006508
Vvi6g458 703 SUPERFAMILY Subtilisin-like 72 551 IPR036852 GO:0004252|GO:0006508
Vvi6g458 703 Gene3D - 290 425 - -
Vvi6g458 703 Gene3D - 564 699 - -
Vvi6g458 703 PRINTS Subtilisin serine protease family (S8) signature 94 113 IPR015500 -
Vvi6g458 703 PRINTS Subtilisin serine protease family (S8) signature 159 172 IPR015500 -
Vvi6g458 703 PRINTS Subtilisin serine protease family (S8) signature 485 501 IPR015500 -
Vvi6g458 703 ProSiteProfiles Serine proteases, subtilase domain profile. 77 547 - -
Vvi6g458 703 Pfam Peptidase inhibitor I9 13 73 IPR010259 -
Vvi6g458 703 ProSitePatterns Serine proteases, subtilase family, serine active site. 486 496 IPR023828 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g458 - - vvi:100262117 1379.0