Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g460 ATGGCTGTGGGCGTTGTGGTCTGCTTTGCTTCCCTTATCTCGTTATTCTCACTCGTTCAAGCTAAAATTCCTGGCGCCTACTCCGGCGGTGCTTGGCAGAGTGCTCACGCCACCTTCTACGGTGGCAGTGACGCCTCTGGCACTATGGGTGGAGCTTGTGGATACGGTAACCTTTACAGCCAAGGGTACGGCGTGAACACAGCTGCACTGAGCACAGCACTCTTCAACAATGGACTCAGTTGCGGCGCTTGTTTCGAACTCAAGTGCGCCAATGACCCCACGTGGTGCCACTCCGGCAGCCCCTCCATTCTTATCACCGCTACCAACTTCTGCCCACCAAACTATGCTCTTCCCAGCGACAATGGCGGCTGGTGCAACCCTCCCCGCCCCCACTTCGATCTCGCCATGCCCATGTTCCTCAAGATCGCTGAGTATCGTGCCGGGATCGTCCCCGTGGCTTTCCGCCGGGTGCCGTGCCGTAAGCAAGGAGGGATTAGGTTCACGATCAACGGCTTCCGGTACTTCAATCTGGTTCTGATCACCAACGTGGCAGGCGCAGGGGATATCGTGAGGGCGAGCGTAAAAGGGTCGAAGACAGGGTGGATGAGCCTGAGCAGGAACTGGGGTCAAAACTGGCAGTCAAACGCAGTGCTGGTGGGGCAATCGCTGTCGTTCAGAGTCACGGGGAGTGACAGGCGCACATCAACATCCTGGAACATCGCACCAGCGCATTGGCAGTTCGGTCAAACCTTCAGCGGAAAAAGAAAAAGTGTGAGTGCTTTTTTGACTATTGTGTGGGAAATGGGAATTTGTGAAGTCCAAGGGAAAAGGTGA 834 55.76 MAVGVVVCFASLISLFSLVQAKIPGAYSGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCANDPTWCHSGSPSILITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRASVKGSKTGWMSLSRNWGQNWQSNAVLVGQSLSFRVTGSDRRTSTSWNIAPAHWQFGQTFSGKRKSVSAFLTIVWEMGICEVQGKR* 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5817225 5819618 - Vvi6g460 Vvi6g460 788037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g460 277 SMART dpbb_1 67 154 IPR007112 -
Vvi6g460 277 Gene3D - 18 160 IPR036908 -
Vvi6g460 277 PANTHER EXPANSIN 6 254 - -
Vvi6g460 277 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Vvi6g460 277 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Vvi6g460 277 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Vvi6g460 277 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Vvi6g460 277 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Vvi6g460 277 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Vvi6g460 277 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Vvi6g460 277 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Vvi6g460 277 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Vvi6g460 277 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Vvi6g460 277 Gene3D - 164 256 IPR036749 -
Vvi6g460 277 PANTHER EXPANSIN-A15 6 254 IPR002963 GO:0009664
Vvi6g460 277 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Vvi6g460 277 SUPERFAMILY PHL pollen allergen 161 252 IPR036749 -
Vvi6g460 277 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Vvi6g460 277 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Vvi6g460 277 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Vvi6g460 277 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Vvi6g460 277 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Vvi6g460 277 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Vvi6g460 277 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Vvi6g460 277 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Vvi6g460 277 Pfam Lytic transglycolase 67 153 IPR009009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g460 Vvi8g738 ECH
Vvi6g460 Vvi13g310 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g460 - - vvi:100263987 536.569