Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g468 ATGGCTGGTGGGGAGAGGCGGCGACTCAAGGGAGGAGATTCGGCCTTTTTGACCGATTCAGATCAGTTTCCAAATTTTGAGAATGGATTCAAATTCGATTCTCACTCGCCTCTAGATTTTAACTTCTTGGATCGTCCTGTTCTTCCTCCTGATATGAACCTGGGTGCGTTTGCTCCATCTTCGAGCTTGAGCCCAGATGGAGATTCTTCTGATGAAGGTGATGATAGTTTTCTCAAGTACGTAAGCCAGGTGCTTATGGAAGAGAATCTGGAGGACAAAGCTTGTATGTTCCATGACCCGCTGGCGCTACAAGCTGCTGAGAGGTCGTTTTACGAGGTTCTTGGTGGGCAAAATCCTCCTTCCCGGAATCAAACCCATCAAATTGTTGACAGTCCTGATGATAATGCTTGGAGTAGTTTCAGTGATTATAGTAGTTATAGCAGTCCTAGTAATGGCTCTAGCAATTCGGTGAACCATCACTCGACTATAGGATCTGGCTCACAGTCCTCCACAAACTCTTTTGATAGTTTCAGTAAGACTGGTAACGAGGCACCAAGCCCAGTCTTGGTTCCAAATATTTTTAGTGATAGCGAATCGGTGTTGCAGTTTAAGAGAGGAGTAGAGGAAGCTAGTAAATTCCTTCCTAAGGCTACTAATCTTGATGAGAGGGAGAATTCACCTAAATGGTTGAGGGGACGAAAGAATCTTCACAGAGAAGATCATGAATTAGAAGAAAGGAGTAGAAAGCAGTCAGCAGTTCATCTGGAAGAAGACGAAGATGAGCTATCAGAGATGTTTGATAGGGTATTGCTATGTTCTGATCCTAAAGCAGAGCGTTCTTACTACTGTACTGGGGAAGAAGACTGCAATAGCTTGCAGCAGTCTGAACATCCACAGTCTAATGCTGAAAAGACACGCACTAAGAAGTCATCTAAGGAAAGGTTGGCTCATTTCTTTGCTGAAGGCCTGGAAGCACGCTTGGCAGGCACTGGGACAGAGATTTATACTGTCCTAGCTTCCAAGAAGGTGTCAGCTGCTGCTATGTTGAAAGCTTACGAACTTTTCCTTGCAGCCTGCCCATACAAGATGATCTCTATTTTCTTTGCGAACCATATGATTTTGCGTTTAGCTGAGAAAGCAAAAGTGCTTCATATTATAGATTTTGCAGAAAGAGTTGAGGAGACAGGGCGCCGACTGGCAAGGTATTGTGAACGATTCAATGTTCCATTTGAGTACAATGCCATAGCAAAGAAGTGGGAAACTATCCAAATTGAGGATCTCAAGGTTGACAGCAATGAGGTAATTGCTGTGAACAGCATGTTCCGCACTGTTTCACTTCTCTGCAGTGTGATGAACGTCATAGCATGTGAGGGTTCTGAAAGGGTTGAGAGGCCTGAGACATACAGGCAGTGGCAGGTTCGGACCCTGAATGCTGGGTTCAGACAGCTCCCATTAAATCAGGAGCTCACAAAGAAATTGAAGACCAAGGTTAAGTTGGGTCACCACAAGGATTTTTTGGTGGATGAAGATGGGAATTGGCTGCTGCAGGGTTGGAAGGGACGAGTTCTCTTCGCTTCCTCCTGTTGGATACCCGCAACATTTCGACACGATATATGCAAGAGAAATATCGGAAAATATCGACCGCAATTTTTTTTTAACCAACGTGGCACTAGGTTACTGGATAATCATCCTTTTCTTCCTCCTGATGTGAACCTGGGTGTGTTTGCTCAATCTTCGAGCTTGAGCCCAGATGGAGATTCTTCCGATGACGGTGACTCTTCTGATAGTTTTCTCAAGTACGTAAGCCAGGTGCTTATGGAAGAGAATCTGGAGGATAAAGCCTGTATGTTCCACGATCCGCTGGCGGTACAAGCTGCTGAGAAGTCGTTTTACGACGTTCTTGGTGGGCAAAATCCTACCTTCCGGAGTGAGCCCCCTGTTCATGTTGACCAAGTTGTTGACAGCCCGGATGATAGCTGGAGTGCTGATGCTCACAATTCTGCGAACCATCAGTGGGTTGTTGATCCCGTCTTGGTTCCAAATATTTTTAGTGATAGTGAGTCGATCTTGCAGTTCAAGAGAGGGGTAGAGGAAGCTAGTAAATTCCTTCCTAAGGCTACTAATCTTGTTATTGATCTGGGGAATGGCACATTGCCTCCACAATCAAAGGTGGAGACTCAAAGGGTGGTTGTGAAGACAGAGAAGGATGAGAGGGAGAATTCGCCTAAATGGTTAAGGAGAAGAAAGAATCTTCACAGGGCTGATATCGAATTAGAAGAAGGAAGGAGAAGCAAGCTGTCAGCCGTTGATTTGGAAGAAGACGATGATGAGCTATCGGAGATGTTTGATAAGGTGTTGCTATGTTCTGATGATAAAGCAGAGCCTTCTTACTATTGTACTGGTGATGAAGACCTGCATAATGGAATTTGCAATACCTGGCAGGTGTATGGAAGTGCACACTCTAATGGTGAAAAGACACGCATTAGAAAGCAGTCCAGTGGGAAGGAGGTTGTGGATTTTGGGACTCTGTTGATTCAGTGTGCACAAGCCGTCTCTGCTGATGATCACCGGACTGCTAATGAACTATTAAAGCAGATTAGGCAGCACTCATCCCCTTTTGGTGATGGTTATCAGAGGTTAGCTCATTGCTTTGCTGATGGCTTGGAAGCACGCTTGGCAGGCACTGGGACAGAGATTTATACTGTCCTAGCTTCCAAGAAGGTGTCAGCGGCTGCTATGTTGAAAGCTTATGAACTTTTTCTTGCAGCCTGCCCATTCAAGAAGATCTCTGCTTTCTTTGCAAACCATATGATTTTACGTCTAGCTGAGAAAGCAACACTTCCCCAACCGGGCTTCCGGCCAGCAGAAAGATGGGAAACTATCCGAATTGAGGATCTTAAGATTGACAGGAATGAGGCGATTGCTGTGAACTGTCTCTTCCGCACTGTTTCACTTCTCTGCAGTGTTTGA 2970 45.25 MAGGERRRLKGGDSAFLTDSDQFPNFENGFKFDSHSPLDFNFLDRPVLPPDMNLGAFAPSSSLSPDGDSSDEGDDSFLKYVSQVLMEENLEDKACMFHDPLALQAAERSFYEVLGGQNPPSRNQTHQIVDSPDDNAWSSFSDYSSYSSPSNGSSNSVNHHSTIGSGSQSSTNSFDSFSKTGNEAPSPVLVPNIFSDSESVLQFKRGVEEASKFLPKATNLDERENSPKWLRGRKNLHREDHELEERSRKQSAVHLEEDEDELSEMFDRVLLCSDPKAERSYYCTGEEDCNSLQQSEHPQSNAEKTRTKKSSKERLAHFFAEGLEARLAGTGTEIYTVLASKKVSAAAMLKAYELFLAACPYKMISIFFANHMILRLAEKAKVLHIIDFAERVEETGRRLARYCERFNVPFEYNAIAKKWETIQIEDLKVDSNEVIAVNSMFRTVSLLCSVMNVIACEGSERVERPETYRQWQVRTLNAGFRQLPLNQELTKKLKTKVKLGHHKDFLVDEDGNWLLQGWKGRVLFASSCWIPATFRHDICKRNIGKYRPQFFFNQRGTRLLDNHPFLPPDVNLGVFAQSSSLSPDGDSSDDGDSSDSFLKYVSQVLMEENLEDKACMFHDPLAVQAAEKSFYDVLGGQNPTFRSEPPVHVDQVVDSPDDSWSADAHNSANHQWVVDPVLVPNIFSDSESILQFKRGVEEASKFLPKATNLVIDLGNGTLPPQSKVETQRVVVKTEKDERENSPKWLRRRKNLHRADIELEEGRRSKLSAVDLEEDDDELSEMFDKVLLCSDDKAEPSYYCTGDEDLHNGICNTWQVYGSAHSNGEKTRIRKQSSGKEVVDFGTLLIQCAQAVSADDHRTANELLKQIRQHSSPFGDGYQRLAHCFADGLEARLAGTGTEIYTVLASKKVSAAAMLKAYELFLAACPFKKISAFFANHMILRLAEKATLPQPGFRPAERWETIRIEDLKIDRNEAIAVNCLFRTVSLLCSV* 990
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5918385 5927879 + Vvi6g468 Vvi6g468 788045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g468 989 MobiDBLite consensus disorder prediction 290 309 - -
Vvi6g468 989 MobiDBLite consensus disorder prediction 54 75 - -
Vvi6g468 989 ProSiteProfiles GRAS family profile. 256 530 IPR005202 -
Vvi6g468 989 ProSiteProfiles GRAS family profile. 831 989 IPR005202 -
Vvi6g468 989 Pfam GRAS domain family 390 446 IPR005202 -
Vvi6g468 989 Pfam GRAS domain family 842 944 IPR005202 -
Vvi6g468 989 Pfam GRAS domain family 449 529 IPR005202 -
Vvi6g468 989 Pfam GRAS domain family 307 388 IPR005202 -
Vvi6g468 989 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 570 645 IPR005202 -
Vvi6g468 989 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 225 301 IPR005202 -
Vvi6g468 989 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 389 447 IPR005202 -
Vvi6g468 989 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 47 136 IPR005202 -
Vvi6g468 989 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 312 388 IPR005202 -
Vvi6g468 989 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 679 946 IPR005202 -
Vvi6g468 989 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 450 531 IPR005202 -
Vvi6g468 989 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 955 986 IPR005202 -
Vvi6g468 989 MobiDBLite consensus disorder prediction 224 260 - -
Vvi6g468 989 MobiDBLite consensus disorder prediction 116 180 - -
Vvi6g468 989 PANTHER SCARECROW-LIKE PROTEIN 14 679 946 - -
Vvi6g468 989 PANTHER SCARECROW-LIKE PROTEIN 14 450 531 - -
Vvi6g468 989 PANTHER SCARECROW-LIKE PROTEIN 14 312 388 - -
Vvi6g468 989 PANTHER SCARECROW-LIKE PROTEIN 14 955 986 - -
Vvi6g468 989 PANTHER SCARECROW-LIKE PROTEIN 14 389 447 - -
Vvi6g468 989 PANTHER SCARECROW-LIKE PROTEIN 14 47 136 - -
Vvi6g468 989 PANTHER SCARECROW-LIKE PROTEIN 14 570 645 - -
Vvi6g468 989 PANTHER SCARECROW-LIKE PROTEIN 14 225 301 - -
Vvi6g468 989 MobiDBLite consensus disorder prediction 1 21 - -
Vvi6g468 989 MobiDBLite consensus disorder prediction 224 256 - -
Vvi6g468 989 MobiDBLite consensus disorder prediction 114 180 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g468 Vvi8g744 ECH
Vvi6g468 Vvi13g312 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14943 PF03514 GRAS 3.30E-23 CL0063 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g468 - - vri:117916836 570.852