Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g470 ATGGATTCCATTCCTAGAAAATTTTCAGGCTCCAAGAACGGGCAAAAATTGTACCACGAGTCGGTTTCCATTAATTCAGATCATAATGTTGTTGAGAGATTCATGGATCCTCCTTTCCTCCCGACCAAATCTCATCCTTACAACTCGGCTACAGTTTCTGGTGCCAGATTGGAGGAGGATTCTGCAGAGGACTGCGAGTTATCCATTGCAATGCTCAAGTACATGGGCGAGATTCTTATGGAAGACGAATTGGAAGACAAGAACTGCATGTTTCAGGACTGCGTGGCCCTCCTAGCTGCTGAGAAATCCTTCTATGATTTAGGCCAGTTAGAAGCCTCTCGCAAGAAGTTGCATCAGAACGAGCAATCAAAAGGGTCGAATGGCAAAGCAGGTCGTGTTAAGAAGAAGCACAACAAAGGGGAACTGGTGGATTTGAATGCACTCTTAATTCAATGTGCACAAGCCGTGGCAGCCTACAATCAGAGAGCTGCAAATGATATACTGAAGCTGATTAGGCAACACTCCTCTCCTTTCGGCAATGGATCTCAAAGATTGGCACATTTCTTCGCAAACAGCCTTGAGGCACGACTTGCTGGAACAGGATTACAAATGTATACAGCCCTTGCCACCAAGAGGACATCAGTTGCTGATGTGATCAAAGCCTACCAGTTATACGTCTCAGCCTGCCCTTTCAAAAGGATGTCAAATAGATATGCCAATCGGGTGATTGCAAAGCTAGCCGAGGGTGCAACAAGGCTGCATATTATTGATTTTGGCGTCCTCTATGGTTTCCAGTGGCCCTGCCTCATCCAGTTCCTCTCTCTGAGACCTGGTGGGCCTCCCAAGCTCCGCATCACTGGGATAGATTTTCCTCAGCCTGGTTTCCGGCCGGCAGAAAGGGTTGAGGAGACAGGACGCCGCTTAGCCAATTATTGTAAGAGATTCAAGGTCCCATTTGAGTACAAAGCCATAGCGCAAAGGTGGGAGACTATTAAAGTTGAGGACCTGGAGATTGACAGAGATGGGTGCCTCAAGGATGCAGTTCTGGAACTGATCAGGAGGATTAATCCAGATATTTTCATCCATGGTGTTTTAAATGGAAACTTCAATACGCCCTTCTTCTTTACACGGTTCCGGGAGGCACTGTTCCACTTCGATGCGTTGTTTGATATGTTAGATGCTTCAGTGCCACGTGAAGATGAAGGAAGGATGATGTTTGAGAGAGAGATATATGGAAAAGATATCATGAACATCATAGCATGTGAGGGCTCAGAGAGGATTGAAAGGCCGGACATTTACAAGCAGTGGCAAGCTCGGAATGAGAGGGCAGGGTTGAGGCAGCTTCCCTTAGAGCAGGAGATACTGATGAAAGTGAGGAATATCGTGAAGATGGATTACCACAAGGATTTTGTGGTGGAAGTGGATGGCGGGTGGATGCTCCACGGTTGGAAGGGGCGAGTCATCTATGCCATCTCCTGTTGGAAGCCTTGCCACCACCTTTGA 1503 47.17 MDSIPRKFSGSKNGQKLYHESVSINSDHNVVERFMDPPFLPTKSHPYNSATVSGARLEEDSAEDCELSIAMLKYMGEILMEDELEDKNCMFQDCVALLAAEKSFYDLGQLEASRKKLHQNEQSKGSNGKAGRVKKKHNKGELVDLNALLIQCAQAVAAYNQRAANDILKLIRQHSSPFGNGSQRLAHFFANSLEARLAGTGLQMYTALATKRTSVADVIKAYQLYVSACPFKRMSNRYANRVIAKLAEGATRLHIIDFGVLYGFQWPCLIQFLSLRPGGPPKLRITGIDFPQPGFRPAERVEETGRRLANYCKRFKVPFEYKAIAQRWETIKVEDLEIDRDGCLKDAVLELIRRINPDIFIHGVLNGNFNTPFFFTRFREALFHFDALFDMLDASVPREDEGRMMFEREIYGKDIMNIIACEGSERIERPDIYKQWQARNERAGLRQLPLEQEILMKVRNIVKMDYHKDFVVEVDGGWMLHGWKGRVIYAISCWKPCHHL* 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5930837 5932814 + Vvi6g470 Vvi6g470 788047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g470 500 PANTHER SCARECROW-LIKE PROTEIN 30 342 496 - -
Vvi6g470 500 PANTHER SCARECROW-LIKE PROTEIN 30 118 341 - -
Vvi6g470 500 PANTHER SCARECROW-LIKE PROTEIN 30 35 113 - -
Vvi6g470 500 MobiDBLite consensus disorder prediction 116 135 - -
Vvi6g470 500 ProSiteProfiles GRAS family profile. 136 495 IPR005202 -
Vvi6g470 500 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 35 113 IPR005202 -
Vvi6g470 500 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 118 341 IPR005202 -
Vvi6g470 500 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 342 496 IPR005202 -
Vvi6g470 500 Pfam GRAS domain family 345 495 IPR005202 -
Vvi6g470 500 Pfam GRAS domain family 146 341 IPR005202 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g470 Vvi8g744 ECH
Vvi6g470 Vvi13g313 ECH
Vvi6g470 Vvi13g312 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14945 PF03514 GRAS 2.60E-58 CL0063 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g470 - - vvi:100257123 766.533