Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g471 ATGGATACCCTTCTCGGAGAATTTTCTGGTTCCATGCCAGAATTCAAATTCGACCATGACTCGGTGTCGGTCTCCAGCTATTCAGATCAGAATCTTGTTGAGAGATCCAACAAGCTCAGTCAGGGCACCATGGATCCTCCTTTCCTACCAACCAATCATCAGCCTTGTAACTCGGCCACATCTGGGGCGACACCGGAAGGGCCTCCAACTGAAGAAGGCGACTTCTCCGTTGCTATGTACAAGTACATAGGTGATATTCTTATGGAAGAGGACTTGGAGGATAAGAATTGCATGTTGCAGGACAGCGTGGCCCTCCTAGCTGCTGAGAAATCCTTCTATGATGTTCTTGGTGAGCCGTTTCTCCCTCAACCCAATTCCCCTCAGTCTATTGGTCGAAACATCGAGAGCCCAGATGATAATCCTGTGACAAGTTGCAGCAGTTCCAGTAGTAACAGCGATGCTACTGCTAATAGCTTTGTTGAATCAGACTGGGCAGGCCAGTTTGAAGCCTCCTACCTGCAAACCCCTCTTGTGAATCAGGTATGGCAGTCCAATACGGAAAAGGGTGGTATCAGAGGAAAGAAAAAGCAACAACGGGGTGATGGTTATGATTCAGAAGAGAGGAGCACGAAACAATCTGCACTTTATGCTGAAGAGTGTGAGCCATCTGAGGTTTTCGACAGTGCATTGCTCTGTGAAGATTTAAATGTGTCTGGAATTTGTATCGTTGAGGAGGAAGCAAGAAAGAAATTGCAGAAGAATGGGGAATCAAAAGCTAATGGTAAAGCAGGGCGTCGTAAGAAACAGGGCAACAAAGGGGAAGTTGTGGATTTGAGGGCACTTCTAACGCAGTGCGCGCAGGCTCTGGCCGGCAGTAATCTGAGGTCTGCAAATGACCTTCTGAAGATGATCAGGCAGCACTCCTCTCCTTGTGGCGATGGGGTTCAAAGGTTGGCTCATTTCTTCGCTAATAGCCTTGAAGCACGCTTGTCTGGCACCGGATTGGAGATGTCTAAAGCCCTCATTGAGAAAGACGAGGTTGTTGTTGTGAACTGTTTGTATCGGCTGAAGAACCTGCTTGATGAAACAGTAGTTGCCAACAGTCCAAGGGATGCTGTTCTGAAATTAATCAGGGAGATTAACCCTGCTGTGTTCATCCATGGGGTTGTTAATGGGACTTTCAACGCCCCCTTCTTCGTCACACGGTTTCGGGAGTCGCTCTTCCACTACGATACACTGTTTGATATGTTTGAGGCAACTGTACCCCGTGAAGATCAAGAGAGGATGCTGTTTGAGCGGGAGATATTTGGAATGGATATTATGAACATCATAGCATGTGAGGGTTCAGAGAGGTTCGAAAGGCCAGAAACATACAAGCAGTGGCAGATCCGGAATGTGAGGGCAGGGTTGAGGCAACTTCCATTAGACCAGGAGATAGTGACAAATGTGAGGAGTACTGTGAAGTTGGATTACCATAAGGATTTTGTTGTGGATGAGGATGGTGGGTGGATGCTACAAGGTTGGAAGGGGCGAATCATCTACGCCATCTCCTTAAGTTATGTTGAAGCTCCACAGTGCATCTCTTCCCATACAGTATTTTTGGAAATCCCTTTTTATACAGTTCTAGTTCTCCGATCAGCAGGAGATTTCCTCCTTTGGTCTGTGAATTCTTCCGCTGATTTTTCCCTCTCGTCAGTGTGTACTTTCAATGTTCTGTCTATTATCTCAGCTACACTGAATTTATACACAAACTCAATATTTTCTTTTTCTTTCCCTCAGTTTTCTCAGAAACCAAACTTAGGATGCAGGCCGAGACTGGAAGAGGCTTCCCCAGAGGAAGGGGGCTTCGTCAATGCTAGTCTCAAGTACATAAACAGGATGCTCATGGAAGACAATATTGAGGAAAAGACAAACACGTTGCATGATAGCTTGGCCCTCCAAGCTGCTGAGAAATCCTTCTACGAAGTCCTCAGTGAGACTCATCTGCCTCTTCGCCATATTGATGAAGCCTCAGCGAATCCAGATGGCAATTTTGTTCAGAATTCCAGTAGTTCTAGTGCTGCTAACAACTTTGTTGATTCAAACTGGTTCTCTGATCTAGGCCATTTTGGAGCCTCTCTCGAGCACACCCCTCCTTGA 2139 46.42 MDTLLGEFSGSMPEFKFDHDSVSVSSYSDQNLVERSNKLSQGTMDPPFLPTNHQPCNSATSGATPEGPPTEEGDFSVAMYKYIGDILMEEDLEDKNCMLQDSVALLAAEKSFYDVLGEPFLPQPNSPQSIGRNIESPDDNPVTSCSSSSSNSDATANSFVESDWAGQFEASYLQTPLVNQVWQSNTEKGGIRGKKKQQRGDGYDSEERSTKQSALYAEECEPSEVFDSALLCEDLNVSGICIVEEEARKKLQKNGESKANGKAGRRKKQGNKGEVVDLRALLTQCAQALAGSNLRSANDLLKMIRQHSSPCGDGVQRLAHFFANSLEARLSGTGLEMSKALIEKDEVVVVNCLYRLKNLLDETVVANSPRDAVLKLIREINPAVFIHGVVNGTFNAPFFVTRFRESLFHYDTLFDMFEATVPREDQERMLFEREIFGMDIMNIIACEGSERFERPETYKQWQIRNVRAGLRQLPLDQEIVTNVRSTVKLDYHKDFVVDEDGGWMLQGWKGRIIYAISLSYVEAPQCISSHTVFLEIPFYTVLVLRSAGDFLLWSVNSSADFSLSSVCTFNVLSIISATLNLYTNSIFSFSFPQFSQKPNLGCRPRLEEASPEEGGFVNASLKYINRMLMEDNIEEKTNTLHDSLALQAAEKSFYEVLSETHLPLRHIDEASANPDGNFVQNSSSSSAANNFVDSNWFSDLGHFGASLEHTPP* 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5938486 5942544 + Vvi6g471 Vvi6g471 788048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g471 712 MobiDBLite consensus disorder prediction 189 210 - -
Vvi6g471 712 ProSiteProfiles GRAS family profile. 269 520 IPR005202 -
Vvi6g471 712 MobiDBLite consensus disorder prediction 252 271 - -
Vvi6g471 712 MobiDBLite consensus disorder prediction 39 65 - -
Vvi6g471 712 MobiDBLite consensus disorder prediction 184 210 - -
Vvi6g471 712 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 342 518 IPR005202 -
Vvi6g471 712 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 40 343 IPR005202 -
Vvi6g471 712 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 606 670 IPR005202 -
Vvi6g471 712 PANTHER SCARECROW-LIKE PROTEIN 30 342 518 - -
Vvi6g471 712 PANTHER SCARECROW-LIKE PROTEIN 30 40 343 - -
Vvi6g471 712 PANTHER SCARECROW-LIKE PROTEIN 30 606 670 - -
Vvi6g471 712 MobiDBLite consensus disorder prediction 123 154 - -
Vvi6g471 712 Pfam GRAS domain family 278 341 IPR005202 -
Vvi6g471 712 Pfam GRAS domain family 342 517 IPR005202 -
Vvi6g471 712 MobiDBLite consensus disorder prediction 39 72 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g471 Vvi13g314 ECH
Vvi6g471 Vvi8g744 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14946 PF03514 GRAS 1.30E-47 CL0063 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g471 - - vvi:100267399 632.869