Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g472 ATGGCAGTTCATGCTCAAAATTCTGAGCCACCCAATGTTTTTGATGAGGCATTGCTCTATAACGATTTAAATATGTCCAAGCTTTGTATTAATGATGATGAAGCAAGCAAGAAGTTGCAGCAGAATGAGCGATCAAAAGGGTCTAATACTAAAGTAGGCCGCGTTAAGAGGCGCAGTAAAGGGGAAGTGGTGGATTTGAGGTCACTTTTAATTCAATGCGCACAAGCTGTGGCGGGCAATGATCAGAGAGCTGCAACTGAACTACTGAAGCTGATTAGGCAACACTCCTCTCCTATGGGTATTGAAAGGCCGTTAGCTGCTGATATCATAAGAGCTTACAAGGTATATGCCTCAGCATGCCCTTTCAAGAGAATGTCGTATTTCTTTGGAAACTGGATGATTGGGAAAGTAGCTGAGAAAGCAACAAGGCTGCACATTATTGATTTTGGTATTCTCTTTGGTTTCCAATGGCCTTCCTTTATCCAGCATCTCTCACAGAGGCCTGGTGGGCCTCCCAGACTACGCATTACTGGAATAGACTTTCCTCAACCCGCGGAGAAGTGGGAAAATATTAGACTTGAGGATCTCAAGATTGACAAAGATGAGAAGCTTGTTGTGAACAGTTTGTATAGGTTAAAGAACCTGCTGGATGAGACCGTAGTGGAAGACTGTCCTAGGGATGCCGTTCTCAACCTAATCAGGAGGATCAATCCAGAAATTTTCATCCATGGAATTGTGAGTGGTTCCTTCAATGGCCCCTTCTTCCTACTTAGGTTTAAGGAGGCACTCCACCAGTATGATGCACTATTTGACATGCTTGATGCTACTGTACCACGAGAAGATCAAGATAGGATGCTGTTTGAGAAAGTGGTATATGGAAGGTATTCCATGAATATCATAGCTCATGAGGGTTCAGAGAGATTTGAAAGGCCAGAAACATACAAGCAGTGGCAGGCTCGGAATGTGAAGGCGGGTTTCAGGCAGCTTCTTTTAGACCAGGAGATCTTGTCCAGAGTGAGAACTACTGTGAAGCAAGGTTTTCATAAGAATTTTATGGTGGAGGAGGATGGTGGGTGGATGCTGCAGGGTTGGAAGGGGAGAACAATCCATGCTCTCTCCTGTTGGAAGCCTTGCTAG 1137 44.59 MAVHAQNSEPPNVFDEALLYNDLNMSKLCINDDEASKKLQQNERSKGSNTKVGRVKRRSKGEVVDLRSLLIQCAQAVAGNDQRAATELLKLIRQHSSPMGIERPLAADIIRAYKVYASACPFKRMSYFFGNWMIGKVAEKATRLHIIDFGILFGFQWPSFIQHLSQRPGGPPRLRITGIDFPQPAEKWENIRLEDLKIDKDEKLVVNSLYRLKNLLDETVVEDCPRDAVLNLIRRINPEIFIHGIVSGSFNGPFFLLRFKEALHQYDALFDMLDATVPREDQDRMLFEKVVYGRYSMNIIAHEGSERFERPETYKQWQARNVKAGFRQLLLDQEILSRVRTTVKQGFHKNFMVEEDGGWMLQGWKGRTIHALSCWKPC* 379
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 5942790 5944119 + Vvi6g472 Vvi6g472 788049
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g472 378 ProSiteProfiles GRAS family profile. 57 376 IPR005202 -
Vvi6g472 378 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 185 377 IPR005202 -
Vvi6g472 378 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 105 184 IPR005202 -
Vvi6g472 378 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 100 IPR005202 -
Vvi6g472 378 Pfam GRAS domain family 107 184 IPR005202 -
Vvi6g472 378 Pfam GRAS domain family 185 376 IPR005202 -
Vvi6g472 378 PANTHER SCARECROW-LIKE PROTEIN 30 185 377 - -
Vvi6g472 378 PANTHER SCARECROW-LIKE PROTEIN 30 105 184 - -
Vvi6g472 378 PANTHER SCARECROW-LIKE PROTEIN 30 2 100 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Vvi6g472 Vvi13g315 ECH
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14947 PF03514 GRAS 3.70E-49 CL0063 Vvi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g472 - - vvi:100245086 738.028