Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g481 ATGAGTTTTGTTTTTCGTGGGTCTCGAGCAGATATAGAAAGTGGACTTCCAGGATTTATTCCTCAGAGACCTGCAGTGCGTCTTCATCCAGCTCGGCCAGTTAACACTAATTCACTGGCTTTTCTTGTCACAGTGCTTTTGCTGTTTATGATTTTGAACTCTCATCAGATGTCACCAAACTTTCTGCTCTGGCTAGTTGTGGGGTTCTTTTTTATGGCCACGAGCTTGAGGATGTATGCAACTTGTCAACAACTACAAGCTCATGCCCAAGCTCATGCTGCAGCTGCCAGTGGCCTACTTGGTCATACTGAATTGCGTTTGCGTATGCCACCATCAATAGCTTTTGCAACTAGAGGGCGATTACAAGGATTGCGACTCCAGCTTGCACTTCTTGATCGCGAATTTGATGACCTGGATTATGAAACCTTGAGATCACTAGATTCTGATAATACTTCCTCAACTTCACTGAGTGAGGAAGAGATCAATGCTTTACCTGTTCACAAGTATAAGGTCACTGGTCCACAAAGTGAGGGGTCATCAATGCAACAGGCTGCATCTTCTTCAGCCTCAGCTGAGTTTGACGAGAAGGCTAGGCAAGACTCTAGAAAGGGGGACAGCAGCATGAAGGGTTCAGAAGATGAACTGACATGCAGCATTTGCTTGGAGCAAGTCAACAGGGGAGAGCTTGTACGTAGCTTGCCATGCTTGCACCAGTTCCATGCCAACTGTATTGATCCATGGCTGCGACAACAAGGCACATGCCCTGTCTGTAAATTTAGGGTCGGGGCAGGATGGCAGGAGAGCAGGGAGAGTGAAATAGATGATGCAGAAATGGTTTAA 840 46.43 MSFVFRGSRADIESGLPGFIPQRPAVRLHPARPVNTNSLAFLVTVLLLFMILNSHQMSPNFLLWLVVGFFFMATSLRMYATCQQLQAHAQAHAAAASGLLGHTELRLRMPPSIAFATRGRLQGLRLQLALLDREFDDLDYETLRSLDSDNTSSTSLSEEEINALPVHKYKVTGPQSEGSSMQQAASSSASAEFDEKARQDSRKGDSSMKGSEDELTCSICLEQVNRGELVRSLPCLHQFHANCIDPWLRQQGTCPVCKFRVGAGWQESRESEIDDAEMV* 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6014663 6018771 - Vvi6g481 Vvi6g481 788058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g481 279 ProSiteProfiles Zinc finger RING-type profile. 217 258 IPR001841 -
Vvi6g481 279 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 279 - -
Vvi6g481 279 CDD RING-H2_PA-TM-RING 216 258 - -
Vvi6g481 279 MobiDBLite consensus disorder prediction 173 192 - -
Vvi6g481 279 MobiDBLite consensus disorder prediction 171 211 - -
Vvi6g481 279 SUPERFAMILY RING/U-box 212 262 - -
Vvi6g481 279 MobiDBLite consensus disorder prediction 193 210 - -
Vvi6g481 279 PANTHER TARGET OF ERK KINASE MPK-1 1 279 - -
Vvi6g481 279 SMART ring_2 217 257 IPR001841 -
Vvi6g481 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 264 IPR013083 -
Vvi6g481 279 Pfam Ring finger domain 216 258 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g481 Vvi13g322 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g481 K16283 - vvi:100260437 477.248