Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g486 ATGAAATTACAACTTTGCCCCCCACTTATAAATATTAGCTTCCTCTCCTCATTTCAGATCTTCTTCTCTCAGTTCTCGTTCCTGTCGACGCTAGGGTTTTTCCTCCCACTTAATGCAAAAATCCATCAGATAATCCATTCGAAAATCCATCAGATATTTGCCTCTTCGTATTCACCATATTTGTGGCCTACCATCCTGGGGTTTTGTGGAGCCATTTGGACAATTTCTTTATTGGGTTTCATCTCAAGGACTACACTATTTTGGAGGCATCGAGGGATTATAAGAGGTTGGTGTATGAGTTTTCAAAGATGGGTTCTCAGTTCAACCAATTCGATGGGCGAAGAAGTGAGGATGAGTGATATTAACGGAGGTGATGGCGGCGATGACGAGCGAGTGCTCGAGTGGGAGGCGGGGCTGCCCGCTGCCGATGATCTGACTCCCCTATCTCAGCCGTTGATCCCTCCGGAGCTGGCGTCGGCGTTCAGCATAACGCCGGAGCCGTGCCGTACGCTGCTGGAGGTGAATCGTGCGTCGCAGAGTACGTTTTCGACCATTCGAGGGCAGTCTCATTCGTTCTCGTCGAACAATTTCAAGTCTTTCAACGAGGAGCGAAACCGCGAGCCAGCGGAGGCCGATTCAGCGATGAGGACGGAGAATTCGAACGATGATCCCTCTGCTCGGACGCTGAAACGACCCCGTTTGGTTTGGACTCCGCAGCTCCACAAGCGATTCGTGGATGTGGTGGGGCATCTGGGCATCAAGAACGCGGTTCCGAAGACGATTATGCAATTGATGAACGTAGAGGGCTTGACTCGGGAGAACGTCGCCAGTCATCTACAGAAGTATCGACTTTACCTGAAACGGATGCAGGGGCTGTCTAACGAGGGTCCATCTTCGTCCGACCATCTTTTCGCGTCCACGCCGGTGCCGCAGAGCTTGCACGAGTCTGGCGGAAGTGTGCATGGGAACGGTCATGGAAATGGTCACATGTCTGTTCCAATTCCCATGCCTTATGGGCAGACGATGATGCACATGCCCGTTCTTGGAGTGTCACATGGCCATGGCCAAATGGGAATGTCAGGTCCAGGTGGATATCATGGCTACGAGTCTCATCATCCTTATAATATGTTGCAGCAGAGAGATTGGTCAGTTGTGTCGTACCCAAATGTCGGTCCTAATGATCAATAA 1188 50.84 MKLQLCPPLINISFLSSFQIFFSQFSFLSTLGFFLPLNAKIHQIIHSKIHQIFASSYSPYLWPTILGFCGAIWTISLLGFISRTTLFWRHRGIIRGWCMSFQRWVLSSTNSMGEEVRMSDINGGDGGDDERVLEWEAGLPAADDLTPLSQPLIPPELASAFSITPEPCRTLLEVNRASQSTFSTIRGQSHSFSSNNFKSFNEERNREPAEADSAMRTENSNDDPSARTLKRPRLVWTPQLHKRFVDVVGHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDHLFASTPVPQSLHESGGSVHGNGHGNGHMSVPIPMPYGQTMMHMPVLGVSHGHGQMGMSGPGGYHGYESHHPYNMLQQRDWSVVSYPNVGPNDQ* 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6065152 6068846 + Vvi6g486 Vvi6g486 788063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g486 395 MobiDBLite consensus disorder prediction 183 230 - -
Vvi6g486 395 MobiDBLite consensus disorder prediction 200 229 - -
Vvi6g486 395 SUPERFAMILY Homeodomain-like 228 288 IPR009057 -
Vvi6g486 395 MobiDBLite consensus disorder prediction 183 199 - -
Vvi6g486 395 Gene3D - 228 290 - -
Vvi6g486 395 Pfam Myb-like DNA-binding domain 235 283 IPR001005 -
Vvi6g486 395 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 232 284 IPR006447 GO:0003677
Vvi6g486 395 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 208 393 - -
Vvi6g486 395 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 112 207 - -
Vvi6g486 395 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 112 207 IPR044841 GO:0003700|GO:0006355
Vvi6g486 395 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 208 393 IPR044841 GO:0003700|GO:0006355
Vvi6g486 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 236 287 IPR017930 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14948 PF00249 Myb_DNA-binding 1.30E-07 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g486 - - vvi:100253567 543.117