Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g486 ATGAAATTACAACTTTGCCCCCCACTTATAAATATTAGCTTCCTCTCCTCATTTCAGATCTTCTTCTCTCAGTTCTCGTTCCTGTCGACGCTAGGGTTTTTCCTCCCACTTAATGCAAAAATCCATCAGATAATCCATTCGAAAATCCATCAGATATTTGCCTCTTCGTATTCACCATATTTGTGGCCTACCATCCTGGGGTTTTGTGGAGCCATTTGGACAATTTCTTTATTGGGTTTCATCTCAAGGACTACACTATTTTGGAGGCATCGAGGGATTATAAGAGGTTGGTGTATGAGTTTTCAAAGATGGGTTCTCAGTTCAACCAATTCGATGGGCGAAGAAGTGAGGATGAGTGATATTAACGGAGGTGATGGCGGCGATGACGAGCGAGTGCTCGAGTGGGAGGCGGGGCTGCCCGCTGCCGATGATCTGACTCCCCTATCTCAGCCGTTGATCCCTCCGGAGCTGGCGTCGGCGTTCAGCATAACGCCGGAGCCGTGCCGTACGCTGCTGGAGGTGAATCGTGCGTCGCAGAGTACGTTTTCGACCATTCGAGGGCAGTCTCATTCGTTCTCGTCGAACAATTTCAAGTCTTTCAACGAGGAGCGAAACCGCGAGCCAGCGGAGGCCGATTCAGCGATGAGGACGGAGAATTCGAACGATGATCCCTCTGCTCGGACGCTGAAACGACCCCGTTTGGTTTGGACTCCGCAGCTCCACAAGCGATTCGTGGATGTGGTGGGGCATCTGGGCATCAAGAACGCGGTTCCGAAGACGATTATGCAATTGATGAACGTAGAGGGCTTGACTCGGGAGAACGTCGCCAGTCATCTACAGAAGTATCGACTTTACCTGAAACGGATGCAGGGGCTGTCTAACGAGGGTCCATCTTCGTCCGACCATCTTTTCGCGTCCACGCCGGTGCCGCAGAGCTTGCACGAGTCTGGCGGAAGTGTGCATGGGAACGGTCATGGAAATGGTCACATGTCTGTTCCAATTCCCATGCCTTATGGGCAGACGATGATGCACATGCCCGTTCTTGGAGTGTCACATGGCCATGGCCAAATGGGAATGTCAGGTCCAGGTGGATATCATGGCTACGAGTCTCATCATCCTTATAATATGTTGCAGCAGAGAGATTGGTCAGTTGTGTCGTACCCAAATGTCGGTCCTAATGATCAATAA 1188 50.84 MKLQLCPPLINISFLSSFQIFFSQFSFLSTLGFFLPLNAKIHQIIHSKIHQIFASSYSPYLWPTILGFCGAIWTISLLGFISRTTLFWRHRGIIRGWCMSFQRWVLSSTNSMGEEVRMSDINGGDGGDDERVLEWEAGLPAADDLTPLSQPLIPPELASAFSITPEPCRTLLEVNRASQSTFSTIRGQSHSFSSNNFKSFNEERNREPAEADSAMRTENSNDDPSARTLKRPRLVWTPQLHKRFVDVVGHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDHLFASTPVPQSLHESGGSVHGNGHGNGHMSVPIPMPYGQTMMHMPVLGVSHGHGQMGMSGPGGYHGYESHHPYNMLQQRDWSVVSYPNVGPNDQ* 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6065152 6068846 + Vvi6g486 Vvi6g486 788063

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g486 395 MobiDBLite consensus disorder prediction 183 230 - -
Vvi6g486 395 MobiDBLite consensus disorder prediction 200 229 - -
Vvi6g486 395 SUPERFAMILY Homeodomain-like 228 288 IPR009057 -
Vvi6g486 395 MobiDBLite consensus disorder prediction 183 199 - -
Vvi6g486 395 Gene3D - 228 290 - -
Vvi6g486 395 Pfam Myb-like DNA-binding domain 235 283 IPR001005 -
Vvi6g486 395 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 232 284 IPR006447 GO:0003677
Vvi6g486 395 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 208 393 - -
Vvi6g486 395 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 112 207 - -
Vvi6g486 395 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 112 207 IPR044841 GO:0003700|GO:0006355
Vvi6g486 395 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 208 393 IPR044841 GO:0003700|GO:0006355
Vvi6g486 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 236 287 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g486 - - - vvi:100253567 543.117
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g486 . . . Bda09g01515 . . . . Cmo13g00108 . Cma01g00619 Cma13g00110 Car01g00563 Car13g00081 Sed14g0045 . Cpe20g00834 Bhi08g00576 Tan01g2411 Cmetu12g0038 . Hepe10g1262 . Lcy11g0162 Cla02g01948 Cam02g2065 Cec02g2102 Cco02g2133 Clacu02g2052 Cmu02g1993 Cre02g2302 Cone3ag0500 Cone10ag0471 . . Lsi02g01341 Csa06g01467 Chy11g01210 Cme11g01332 Blo13g01068 . . . Bpe08g00093 . Bma07g00088 . Sed01g0847 Cmo02g00786 Cmo20g00418 Cma02g00786 . Car02g00565 Car20g00334 . . Bhi10g00739 Tan05g0421 Cmetu11g1564 . Hepe10g1262 . . Cla03g00126 Cam03g0128 Cec03g0127 Cco03g0134 Clacu03g0131 Cmu03g0752 Cre03g0444 . Csa01g02442 Chy12g00223 Cme12g00152
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi5g894 . 1 213 G2-like Transcription Factor Family AT3G24120 74.4 4.5e-80 295.0
Vvi8g1362 ECH 28 214 G2-like Transcription Factor Family AT3G24120 54.4 6.8e-44 174.9
Vvi19g1171 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 7.1e-41 164.9
Vvi3g1096 . 12 167 G2-like Transcription Factor Family AT3G24120 56.8 5.1e-39 158.7
Vvi2g717 . 193 336 G2-like Transcription Factor Family AT1G32240 66.9 1.6e-38 156.0
Vvi18g841 . 1 160 G2-like Transcription Factor Family AT5G42630 57.5 6.7e-44 174.5
Vvi6g486 . 112 394 G2-like Transcription Factor Family AT5G59570 51.3 1.3e-63 240.4
Vvi11g406 . 1 294 G2-like Transcription Factor Family AT2G03500 58.5 4.5e-89 325.5
Vvi1g270 . 1 238 G2-like Transcription Factor Family AT1G25550 61.4 4.1e-67 251.9
Vvi1g270 . 2 238 G2-like Transcription Factor Family AT3G25790 51.8 3.6e-49 192.2
Vvi9g1111 . 1 449 G2-like Transcription Factor Family AT3G13040 51.0 1.1e-93 340.9
Vvi6g486 . 112 361 G2-like Transcription Factor Family AT3G46640 55.4 8.2e-67 251.1
Vvi6g486 . 128 310 G2-like Transcription Factor Family AT5G05090 51.9 3.5e-39 159.1
Vvi5g894 . 1 213 G2-like Transcription Factor Family AT4G13640 69.8 6.1e-61 231.5
Vvi5g894 . 1 213 G2-like Transcription Factor Family AT3G24120 74.4 4.5e-80 295.0
Vvi8g1362 ECH 28 214 G2-like Transcription Factor Family AT3G24120 54.4 6.8e-44 174.9
Vvi19g1171 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 7.1e-41 164.9
Vvi3g1096 . 12 167 G2-like Transcription Factor Family AT3G24120 56.8 5.1e-39 158.7
Vvi1g923 . 1 287 G2-like Transcription Factor Family AT1G69580 54.2 6.5e-59 224.9
Vvi19g1171 . 1 327 G2-like Transcription Factor Family AT1G79430 59.0 1.5e-90 330.1
Vvi3g1096 . 5 212 G2-like Transcription Factor Family AT1G79430 61.9 3.8e-57 219.2
Vvi5g894 . 16 191 G2-like Transcription Factor Family AT1G79430 60.4 5.0e-41 165.6
Vvi6g486 . 128 310 G2-like Transcription Factor Family AT3G10760 53.4 2.3e-40 163.3
Vvi6g486 . 133 310 G2-like Transcription Factor Family AT2G40970 51.9 1.9e-39 159.8
Vvi7g615 . 8 323 G2-like Transcription Factor Family AT4G28610 51.1 4.9e-69 258.8
Vvi14g670 . 67 313 G2-like Transcription Factor Family AT4G28610 52.6 2.0e-54 210.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001910 1 2 1 1 1 2 4 2 2 2 2 2 4 2 2 3 2 2 3 2 3 2 2 2 1 2 2 6 4 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14948 PF00249 Myb_DNA-binding 1.30E-07 CL0123 Vvi TF