Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g5 ATGGAAGGGAACTCAGGCGGAAATGACGTGGAGCTGCTGTGTAAAACGCTACAGAAAACTTCCGCCACTAGGTCCACCATCATCGTTCCCTTTAGCGGCATTTCCTGGTTCTTAGATCTCTTCAATTACTATGTTAATTCCGATGAACAGGACGTTTTCAGCAAGGAGTTGCAGCTTGACACCAAGGTATTTTACTTTGACATCGGCGAGAACAGGAGGGGTCGCTTTTTGAAGGTATCTGAAGCTTCTGTTAGCAGAAATAGGAGTACCATTATTGTTCCTGCAGGAAGCACTCGAGATGAAGGGTGGGCAGCATTCAGGAACATCTTGGCAGAGATTAATGAAGCATCGAGGCTTTTCATCTTGCCCAATCAGCAAAGTTCTGAACCTTCAGAACGGCTTGTTGGGCTTTCAGATGATGTGGGTGCTGGCTTCATATCAGGCCACAGTACTCAACCGGCCCCAGCATCTGAGTTGAATGTGGAGAGGTCAGTTGAATTGCCTGCACAGGATGAAATTGGTAACTTGGGGGTCTCAAAAGTGATTAGAGCTGATCAAAAGAGGTTCTTCTTTGATCTTGGTAGCAACAACAGGGGTCATTTCCTGCGGATATCTGAGGTGGCAGGTTCTGATCGTTCCTCAATCATCCTTCCACTGTCTGGGTTGAAACAGTTTCATGAAATGGTGGGTCATTTTGTGGAGATCACTAAAGATCGAATTGAAGGAATGACAGGTGCGAATGTCCGGACAGTGGATCCCCCTCAAAGATGA 771 46.56 MEGNSGGNDVELLCKTLQKTSATRSTIIVPFSGISWFLDLFNYYVNSDEQDVFSKELQLDTKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSTRDEGWAAFRNILAEINEASRLFILPNQQSSEPSERLVGLSDDVGAGFISGHSTQPAPASELNVERSVELPAQDEIGNLGVSKVIRADQKRFFFDLGSNNRGHFLRISEVAGSDRSSIILPLSGLKQFHEMVGHFVEITKDRIEGMTGANVRTVDPPQR* 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 111925 120245 - Vvi6g5 Vvi6g5 787582

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g5 256 PANTHER PUR-TRANSCRIPTIONAL ACTIVATOR 18 243 IPR006628 GO:0000977|GO:0032422
Vvi6g5 256 SMART pur 51 118 IPR006628 GO:0000977|GO:0032422
Vvi6g5 256 SMART pur 176 237 IPR006628 GO:0000977|GO:0032422
Vvi6g5 256 Gene3D - 45 118 - -
Vvi6g5 256 Gene3D - 168 240 - -
Vvi6g5 256 PANTHER PURINE-RICH BINDING PROTEIN-ALPHA, ISOFORM B 18 243 - -
Vvi6g5 256 Pfam PurA ssDNA and RNA-binding protein 19 115 IPR006628 GO:0000977|GO:0032422
Vvi6g5 256 Pfam PurA ssDNA and RNA-binding protein 170 232 IPR006628 GO:0000977|GO:0032422
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g5 K21772 PURA; transcriptional activator protein Pur-alpha - vvi:100246785 492.656
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g5 . Blo03g01398 . . . . Bma14g00742 Bma07g01371 Cmo10g00829 Cmo11g00777 Cma10g00802 . . . . . Cpe18g00278 Bhi02g01439 Tan09g0742 . . . . . . . . . . . . . Cone5ag1410 . . Lsi06g00378 . . . . . Bda07g00772 Bda09g00340 . Bpe11g00947 Bma07g00328 . . . . Cma11g00768 . . . . Cpe04g00992 . . . . . . . Cla03g01411 Cam03g1491 Cec03g1529 Cco03g1523 Clacu03g1514 Cmu03g2071 Cre03g1743 . Csa01g03033 Chy02g01313 Cme02g00345
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003968 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 43