Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g51 ATGTTTAAAAGAAATTGTTACAAGATCTTCGCCTGTTTGAAACCTCCGCTGAAGGAGGTTCCAGAAGGGGATTGGATATGCCAGTTTTGCGAGGCCCGGAAATTGGGTAAGGAAGTTGTTCTTCCAAATCCACCCAAAGGGAAGAAACAGAAGAGAACTGCAAGGGAGAAGCTTCTTTCCAGTGATTTATGGGCGGCTCATATTGAAAATATATGGAAAGAAGTGGATGCTGGAAGACAGCCGCATAATCTAAGAAGGGAGCTTTATAGGACAAATGATTTTGCTGACATTGAGATGGAATCCGTCATTAGGCTTTGCAATGTAATGAGCCCAAAAGAATTTACCAAGGCCAATAATGAAGGTGATGATATTTTCTTATGTGAATATGAATATGACATGCATTGGCACAGTTTCAAGCGTCTTGCAGAGATCAATAATGGTGAAGAAGGCAATGAAGAAGCTGACAATGATGTAGATTGGGATTATGGAAAGGACTCAGGCTCTGATACTGAAGAAGACATGGAATATGAAGAGGGAAATGTGAACAATTTACCCAGTGGACCATCCCCAGCTCATGCAGTTGCTGCAAATTCATGGAAGGGAAGGATCTTTGGGCTAAACAAAATTGGGACAAAGAAAATTCTAGGGCATGTGAGATGCCATAAGCAGACTGAACTTGAAAGAGCAAAAGCAACACTTCTGTTGACAACTTTGCCCAAGTCTCTACCTTGCAGGATTAAGGAAATGGAAGAGATAACTGCATTTATAAAAGGTGCCATCTGCAATGATCAATGTCTGGGACGTTGCCTGTACATTCATGGTGTTCCTGGAACTGGCAAGACAATGAGTGTACTTTCAGTAATGAGGAATCTAAGGTCTGAAGTTGATGCAGGAAGCATAAAACCCTACTGTTTTGTGGATATTAATGGTCTAAAATTGGCATCATCAGAGAACATTTACAGGGTTATATATGAGGCATTAAGTGGTCATAGGGTTGGTTGGAAAAAGGCTCTTCACTTGCTGAATGAGCGATTTGCAGATGAAAGCAAAATTGCCAAAGAGGAGATCCGGCCTTGTATTCTACTTATTGATGAACTTGATCTTCTCGTAACCAGAAATCAGTCGGTTCTGTACAACATTCTTGATTGGCCTACTAAGCCACATTCCAAATTGATCGTGATAGGGATAGCAAATACCATGGATCTTCCAGAGAAGTTGCTTCCCCGTATTTCAAGCCGAATGGGTATTCAAAGGCTTTGTTTTGGGCCCTATAATTATCAACAGTTACAAGAAATCATTCCAAGTCGTCTTCAAGGAATTGATGCATTTGAAAGGCAAGCTATAGAATTTGCTTCAAGAACGGTGACAGCTATTTCTGGAGATGCACGTCGTGCTTTGGAGATATGTAGGCGTGCAGCAGAGCTTGCAGATTATCATATTAAAAAGCTAGCTTCACCTCCTGATTCTTCTTCTGAAGGAAAAGCCCTTGTTGGAATGGCAGAGGTAGAAGCAGCCATACAGGAAATGTTCCAGGCACCTCATATTCAAGTGATGAAGAGTAGCTCAAAGCTGAGTAAAATCTTCTTAGTAGCAATGGTGCATGGACTCTATCAAACAGGAATGGTGGAGACCACTTTTGAAAAGTTGTCAGTGACTGTTTCATGCCTATGTACAAGCAATGGAGAAAAGTTCCCTGGATGGGACACACTCTTAGAGTTGGTTGTAAGCTTGGTGAATGCAGAATCATTCTATGTTAAGCAGGAGCTAAGCATAGGTTGCAGAAGTTGCAGCTCAATTTTCCAAGTGATGATGTAG 1815 41.38 MFKRNCYKIFACLKPPLKEVPEGDWICQFCEARKLGKEVVLPNPPKGKKQKRTAREKLLSSDLWAAHIENIWKEVDAGRQPHNLRRELYRTNDFADIEMESVIRLCNVMSPKEFTKANNEGDDIFLCEYEYDMHWHSFKRLAEINNGEEGNEEADNDVDWDYGKDSGSDTEEDMEYEEGNVNNLPSGPSPAHAVAANSWKGRIFGLNKIGTKKILGHVRCHKQTELERAKATLLLTTLPKSLPCRIKEMEEITAFIKGAICNDQCLGRCLYIHGVPGTGKTMSVLSVMRNLRSEVDAGSIKPYCFVDINGLKLASSENIYRVIYEALSGHRVGWKKALHLLNERFADESKIAKEEIRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIIPSRLQGIDAFERQAIEFASRTVTAISGDARRALEICRRAAELADYHIKKLASPPDSSSEGKALVGMAEVEAAIQEMFQAPHIQVMKSSSKLSKIFLVAMVHGLYQTGMVETTFEKLSVTVSCLCTSNGEKFPGWDTLLELVVSLVNAESFYVKQELSIGCRSCSSIFQVMM* 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 705626 713337 - Vvi6g51 Vvi6g51 787628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g51 604 ProSiteProfiles BAH domain profile. 31 142 IPR001025 GO:0003682
Vvi6g51 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 480 IPR027417 -
Vvi6g51 604 Pfam ATPase family associated with various cellular activities (AAA) 271 416 IPR003959 GO:0005524|GO:0016887
Vvi6g51 604 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 8 578 IPR020793 -
Vvi6g51 604 Gene3D - 60 190 IPR043151 -
Vvi6g51 604 Gene3D - 222 419 IPR027417 -
Vvi6g51 604 SMART AAA_5 266 420 IPR003593 -
Vvi6g51 604 Gene3D - 420 511 - -
Vvi6g51 604 MobiDBLite consensus disorder prediction 146 172 - -
Vvi6g51 604 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 40 IPR013083 -
Vvi6g51 604 SUPERFAMILY FYVE/PHD zinc finger 11 36 IPR011011 -
Vvi6g51 604 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 8 578 - -
Vvi6g51 604 CDD AAA 247 423 - -
Vvi6g51 604 Pfam AAA lid domain 443 479 IPR041083 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g51 K02603 - vvi:100244935 1052.35