Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g524 ATGGTCTCCACCGAAGAAATCCTTCTCGAACGTCCTAGGGCTCCGGGTAGCAAAGCGGAAGAATCAAAGGTTGCAGGAGACTCCTTGGCTCAACTTGGGAAAGGAGGTGCTGTTCTCATGGTGTGCAGGACCTGTGGTAAGAAGGGTGACCATTGGACTTCAAGGTGCCCATACAAGGATCTTGCCCCACCTTCTGAAGGATTCATTGATAAGCCTGCTGCATCAGAAGGCACAGCCACTGCTTCTGGTCCTAGCAAGGGGACATATGTTCCCCCAGGCATGAGAGCAGGTGCAGAGAGAACTGGAACTGAAATGAGACGCAGGAATGAAGAGAACTCTGTTCGGGTCACCAACCTATCAGAGGACACCCGGGAGCCTGACTTGCATGAGCTCTTCAGGACATTTGGCCCTGTAAGTCGTGTGTATGTTGCTGTTGATCAGAAGACTGGCATGAGCAGAGGTTTTGGATTTGTTAACTTTGTGAACAAGGAAGATGCTGAGAGAGCTATCAACAAACTCAATGGATATGGTTATGACAATCTCATCCTACGAGTTGAATGGGCCACGCCAAGGTCAAACTAA 582 49.66 MVSTEEILLERPRAPGSKAEESKVAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAPPSEGFIDKPAASEGTATASGPSKGTYVPPGMRAGAERTGTEMRRRNEENSVRVTNLSEDTREPDLHELFRTFGPVSRVYVAVDQKTGMSRGFGFVNFVNKEDAERAINKLNGYGYDNLILRVEWATPRSN* 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6332934 6335895 - Vvi6g524 Vvi6g524 788101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g524 193 MobiDBLite consensus disorder prediction 67 112 - -
Vvi6g524 193 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Vvi6g524 193 SUPERFAMILY RNA-binding domain, RBD 110 192 IPR035979 GO:0003676
Vvi6g524 193 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 193 - -
Vvi6g524 193 Pfam Eukaryotic translation initiation factor 3 subunit G 2 61 IPR024675 -
Vvi6g524 193 Gene3D - 72 193 IPR012677 -
Vvi6g524 193 CDD RRM_eIF3G_like 113 188 IPR034240 -
Vvi6g524 193 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 190 IPR000504 GO:0003723
Vvi6g524 193 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 193 - -
Vvi6g524 193 MobiDBLite consensus disorder prediction 1 23 - -
Vvi6g524 193 SMART rrm1_1 113 186 IPR000504 GO:0003723
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g524 Vvi8g784 ECH
Vvi6g524 Vvi13g356 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g524 K03248 - vvi:100265545 394.815