Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g533 ATGCAGGTCTATATAGTCTATCTGGGATCCCTTCCACAAGGGGAATTCTCACCTTTGTCTCAACACCTTAATATTCTTGAAGATGTTCTTGAGGGCAGTTCTTCAAGAGACTCCTTGGTCAGAAGTTATAAGAGAAGTTTCAATGGATTTGCAGCCAAGCTCACTGAAAAAGAACGAGAAAAATTGTGTAATAAGGATGGTGTGGTGTCCATTTTTCCTAGTAATCTTCTTCAACTTCAAACAACAAGATCCTGGGACTTCATGGGACTCTCTGAAACCATTGAGCGAAAGCCTGCTGTTGAGAGTGATGTTATAGTTGGAGTCATTGACACTGGAATTTGGCCTGAATCACCAAGCTTCAGTGATGAAGGTTTTGGTCCACCTCCAAAAAAATGGAAAGGTGTTTGTTCGGGTGGAAAAAATTTTACTTGCAACAAGAAGGTCATTGGAGCTCAACTTTACAATTCACTGAATGATCCTGATGATTCTGTGAGGGACAGAGATGGTCATGGATCTCACACTGCCTCAACAGCTGCTGGCAACAAAATAAAGGGAGCAAGCTTTTATGGGGTGGCAGAGGGATCTGCAAGAGGAGGGGTTCCCTCTGCAAGGATTGCTGTATACAAAGTTTGTTTTCAATCAGGGTGTGCAGACGCAGACATATTGGCTGCCTTCGATGATGCTATTTCCGATGGGGTTGACATCATTTCAGTTTCTCTGGGAAAACGAAGTGCTCCAAATTTGAATGAAGACTCATTGGCAATTGGCTCTTTTCATGCCATGGCCAAAGGTATTTTAACCTTGAATTCTGCAGGAAATGGCGGTCCCAATACATATTCAGTAGGAAGTGTTGCACCATGGATGGTCAGCGTAGCCGCAAGCACCACAGACCGCCAAATCATAACCAAGGTTGTTCTTGGCAATGGAACAACTTTAGCTGGTAGTTCAATTAATACTTTTGTGTTGAATGGAACCGAGTTTCCTCTTGTGTATGGAAAAGATGCAACCCGGACATGTGATGAATATGAAGCCCAGCTGTGCTCTGGGGATTGTTTGGAAAGAAGTTTAGTGGAGGGAAAAATTATACTATGTAGAAGCATCACAGGAGACAGAGATGCTCATGAAGCTGGTGCAGTTGGATCAATCTCACAAGAGTTTGATGTTCCTTCAATTGTCCCTTTTCCAATATCAACATTAAATGAGGAAGAATTTAGAATGATTGAAACTTACTACATTTCCACAAAAAATCCTAAAGCAAACATATTAAAGAGTGAATCAACCAAAGATTCTTCTGCTCCTGTAGTGGCTTCATTTTCATCAAGAGGGCCAAATACTATCATACCTGAGATTTTGAAGCCAGATATAACAGCCCCAGGAGTAGATATTTTGGCAGCATATTCCCCTGTTGCTCCAGTTACTGATGAAGCTGAAGATAAAAGGTCAGTCAAATACACCATATTATCAGGAACATCCATGTCTTGCCCCCATGTTGCTGGAATTGCTGCTTATATCAAAACCTTCCATCCCGACTGGTCTCCTTCAGCCATCCAATCTGCTCTTATAACTACAGCTTGGCCCATGAATGGTACCACATATGATGATGGTGAACTCGCGTTTGGATCTGGGCATGTTGATCCAGTAAAAGCTGTAAGTCCAGGTTTAGTGTATGAAGCCCTTAAGGCTGACTACATAAACATGATGTGCAGCATGGGCTATGATACAAAGACAGTGAGACTCGTCTCAGGAGACAACAGCAGTTGTCCTAAAGACACTAAAGGTTCCCCAAAAGATCTTAATTATCCTTCGATGGCAGTTAAAGTTGAAGAAACAAAATCCTTCAAAGTTGAATTTCCAAGGACAGTAACAAATTTTGGGAGTGCAAATTCTACATATAAAGCTACAGTCATCAACACAAATTCCCATATCAAGGTCCAAGTGAATCCTGACATCCTATCTTTCAAGTTAGAAAAAGAGAAGAAATCTTTTGTTGTGACTGTTGTTGGACAAGGACTCGACTCAATTGAGGCACCAATAGCAGCTGCATCACTGGTGTGGTCTGATGGCACTCATAGTGTGAGAAGTCCCATCGTAGCCTACATTGATAGGAATATTGGTTAA 2118 41.74 MQVYIVYLGSLPQGEFSPLSQHLNILEDVLEGSSSRDSLVRSYKRSFNGFAAKLTEKEREKLCNKDGVVSIFPSNLLQLQTTRSWDFMGLSETIERKPAVESDVIVGVIDTGIWPESPSFSDEGFGPPPKKWKGVCSGGKNFTCNKKVIGAQLYNSLNDPDDSVRDRDGHGSHTASTAAGNKIKGASFYGVAEGSARGGVPSARIAVYKVCFQSGCADADILAAFDDAISDGVDIISVSLGKRSAPNLNEDSLAIGSFHAMAKGILTLNSAGNGGPNTYSVGSVAPWMVSVAASTTDRQIITKVVLGNGTTLAGSSINTFVLNGTEFPLVYGKDATRTCDEYEAQLCSGDCLERSLVEGKIILCRSITGDRDAHEAGAVGSISQEFDVPSIVPFPISTLNEEEFRMIETYYISTKNPKANILKSESTKDSSAPVVASFSSRGPNTIIPEILKPDITAPGVDILAAYSPVAPVTDEAEDKRSVKYTILSGTSMSCPHVAGIAAYIKTFHPDWSPSAIQSALITTAWPMNGTTYDDGELAFGSGHVDPVKAVSPGLVYEALKADYINMMCSMGYDTKTVRLVSGDNSSCPKDTKGSPKDLNYPSMAVKVEETKSFKVEFPRTVTNFGSANSTYKATVINTNSHIKVQVNPDILSFKLEKEKKSFVVTVVGQGLDSIEAPIAAASLVWSDGTHSVRSPIVAYIDRNIG* 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6398345 6406305 + Vvi6g533 Vvi6g533 788110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g533 705 ProSitePatterns Serine proteases, subtilase family, serine active site. 489 499 IPR023828 -
Vvi6g533 705 SUPERFAMILY Subtilisin-like 79 554 IPR036852 GO:0004252|GO:0006508
Vvi6g533 705 Pfam Subtilase family 102 534 IPR000209 GO:0006508|GO:0008236
Vvi6g533 705 PRINTS Subtilisin serine protease family (S8) signature 101 120 IPR015500 -
Vvi6g533 705 PRINTS Subtilisin serine protease family (S8) signature 166 179 IPR015500 -
Vvi6g533 705 PRINTS Subtilisin serine protease family (S8) signature 488 504 IPR015500 -
Vvi6g533 705 PANTHER SUBTILISIN-LIKE PROTEASE SBT4.3 3 700 - -
Vvi6g533 705 Gene3D Peptidase S8/S53 domain 103 563 IPR036852 GO:0004252|GO:0006508
Vvi6g533 705 CDD Peptidases_S8_3 77 525 IPR034197 -
Vvi6g533 705 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 3 700 IPR045051 -
Vvi6g533 705 ProSiteProfiles Serine proteases, subtilase domain profile. 84 550 - -
Vvi6g533 705 MobiDBLite consensus disorder prediction 159 178 - -
Vvi6g533 705 Pfam Fibronectin type-III domain 597 697 IPR041469 -
Vvi6g533 705 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 1 80 IPR037045 -
Vvi6g533 705 CDD PA_subtilisin_like 304 421 - -
Vvi6g533 705 Gene3D - 297 428 - -
Vvi6g533 705 Gene3D - 567 700 - -
Vvi6g533 705 Pfam Peptidase inhibitor I9 3 79 IPR010259 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g533 Vvi13g373 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g533 - - vvi:100260464 1396.72