Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g555 ATGCTGACTGTGGAGAGCTCCTGTGTGGATGTGGAGTCCAATGGCCGTCGCCGTAGTGGCTCCGGCAGCACTGATGGGAGTCTGGGCTTCTCGGACTCTGATGGGAAGGCGTGGCTCTCGCCGTCCGATGAATGTCGGTTTTCCGGTGGGATCGAGGGGGGTTTGGGGTCCTCGTCGTCGGATTGTGGGTCGGAGGTGGATTTGGAGAGTGGGGTTTTGGCGGTGGAAAGGGATTGTAGAATTTGTCAGCTGAGCTTGGATGCCGGTGATCAAGAGACTGGATTGGCTATTGAGCTGGGTTGCTCTTGTAAGGGTGATCTTGGTTCTGCTCACAGGCAATGTGCTGAGACCTGGTTCAAAATTAAGGGAAATACAACCTGCGAGATTTGTCATGCTACAGCGGTCAATGTTGCTGGGGAGCAGATTAATGAGGCAGAAAATACTATTGCAGCAAGCACAGCAGAACCAGTAGCACCTGCAATTCCTGCAGAGCCACAACGCACCTGGCATGGACGGCGTGTCATGAATGTTCTGCTTGCCTGCATGATTGTTGTCTTTGTCATTTCTTGGCTCTTTCACTTCAATGTAATATCATGA 597 52.09 MLTVESSCVDVESNGRRRSGSGSTDGSLGFSDSDGKAWLSPSDECRFSGGIEGGLGSSSSDCGSEVDLESGVLAVERDCRICQLSLDAGDQETGLAIELGCSCKGDLGSAHRQCAETWFKIKGNTTCEICHATAVNVAGEQINEAENTIAASTAEPVAPAIPAEPQRTWHGRRVMNVLLACMIVVFVISWLFHFNVIS* 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6575327 6579034 - Vvi6g555 Vvi6g555 788132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g555 198 PANTHER OS01G0850200 PROTEIN 9 196 - -
Vvi6g555 198 MobiDBLite consensus disorder prediction 1 30 - -
Vvi6g555 198 Pfam RING-variant domain 79 130 IPR011016 GO:0008270
Vvi6g555 198 SMART ringv_2 78 131 IPR011016 GO:0008270
Vvi6g555 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 140 IPR013083 -
Vvi6g555 198 ProSiteProfiles Zinc finger RING-CH-type profile. 71 137 IPR011016 GO:0008270
Vvi6g555 198 SUPERFAMILY RING/U-box 76 133 - -
Vvi6g555 198 MobiDBLite consensus disorder prediction 1 33 - -
Vvi6g555 198 CDD RING_CH-C4HC3_MARCH 79 131 - -
Vvi6g555 198 Coils Coil 135 155 - -
Vvi6g555 198 PANTHER ZINC FINGER, RING-CH-TYPE 9 196 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g555 Vvi8g828 ECH
Vvi6g555 Vvi13g418 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g555 - - vvi:100250194 365.925