Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g593 ATGGATTCTCGCAGTAGATCGCGAAATGCTCTCTCGTCTTCGTGGTTTTATCTGAAAAAGATCTTCGCTTCCAAGCCATGTACGGCGAGTATGGACACGCAACCGGCGACGGCGACGGTGTCTTCCGCCAGATCGTCCCTGCACTCCGTGGTCTCCGTTGTACTGCCTGAAATGATGGTTGTGTCGGATCCTCAACGCAAAGTCCCGACTGCGACTCGCCCGGAGTCCGATATCTCCGCCGACCATCAGTTCTTTCCTCTCCGAAACGATATCTTTCCGTGCCCGGCATGCGGCGAAGTCTTTCAGAAACCGCAGAATCTCGAACAGCATCAAGCCCTGAAACACGCGGTTTCGGAGCTCATTGACGGAGATTCAGGGAATAACATAGTCCGGATCATATTCAAAACCGGTTGGACCGACAGTGAAAAGATACCGAAAATTCAGCGGATCTTGAAAATCCACAACAGCTCGAAAATACTGGCGAGGTTCGAAGAGTACAGAGAGTCTGTAAAATCCAAAGCGGCGAGAAACGGCGCCGTTCGGAGACGCGACGAGAGGTGCATCGCCGACGGCAACGAGCTCCTGAGGTTTCACTGCTCGACGTTCCTATGCAATTTGGGGCAAAACGGAAACTCCAGCGTCTGCAACCACCAGTACTGCAGCGTCTGTGGGATCATCAGAACCGGATTCTCACCCAAGTTGGACGGAATCTCCACGCTATCCACCAGCTGGAGAGCACACGCCACGATCCCGGAGGACATCGAAGACGAGTTCAGGTTCATGAATGTGAAGAGAGCGATGCTTGTGTGCAGAGTGGTGGCCGGCCGAATCGGAAGCGACCAGGACGAAGTGGATAAGGAGGACGGCGGATTCGATTCAGTGGTGGGCAGAAGCGCCATAGGCGGCGGCGGATCGCTGACAAGGTTGGTGGACGACGAAGAGTTACTGGTATTCAACCCAAGGTCTGTGCTACCTTGCTTTGTAATAGTATACTCTGTGTGA 1002 53.69 MDSRSRSRNALSSSWFYLKKIFASKPCTASMDTQPATATVSSARSSLHSVVSVVLPEMMVVSDPQRKVPTATRPESDISADHQFFPLRNDIFPCPACGEVFQKPQNLEQHQALKHAVSELIDGDSGNNIVRIIFKTGWTDSEKIPKIQRILKIHNSSKILARFEEYRESVKSKAARNGAVRRRDERCIADGNELLRFHCSTFLCNLGQNGNSSVCNHQYCSVCGIIRTGFSPKLDGISTLSTSWRAHATIPEDIEDEFRFMNVKRAMLVCRVVAGRIGSDQDEVDKEDGGFDSVVGRSAIGGGGSLTRLVDDEELLVFNPRSVLPCFVIVYSV* 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7023956 7025437 + Vvi6g593 Vvi6g593 788170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g593 333 Gene3D - 123 332 - -
Vvi6g593 333 PANTHER NUCLEIC ACID BINDING PROTEIN 4 332 - -
Vvi6g593 333 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 332 - -
Vvi6g593 333 SUPERFAMILY ADP-ribosylation 117 332 - -
Vvi6g593 333 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 120 IPR013087 -
Vvi6g593 333 ProSitePatterns Zinc finger C2H2 type domain signature. 94 115 IPR013087 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14953 None None None None Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g593 - - vvi:100248366 651.744