Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g608 ATGAAGTTGTGTAAAATGAAGAATGGTGATCACCATCAGAAAGAAGCAGAAGAGATTGCTGGTAAAAATGTGAGGCTCTTTTCCTATAATGCATTGAGATCAGCAACACGGAACTTCCATCCATCTAACCGAATAGGCAGAGGTGGCTTTGGAATTGTTTATAGGGGAGTTTTGAGGGATGGAACTCAAGTTGCTGTGAAGTCTCTCTCTGTTGAATCTAAGCAAGGAAAAAGGGAGTTCTTAACTGAGATTGACATGATTTCAAATATACAACATCCATGCCTTGTTCGACTTATTGGTTGTTGTGTTGGGGGTGGTAGTCGAATGCTGGTCTATGAATATCTGGAGAACAAAAGTCTTTCAAGTGCTTTACTCAGTTCGAAGTCTAAACGAAGTGTTTTAGATTGGCCTAAGAGGGCTGCAATCTGTACAAGCACCGCTCACGGCCTTGCATTTCTTCATGAGGAAGCCGAACCCCGAATTATTCACCGAGATATCAAGGCCAGTAATATACTTCTTGATGGGGACCTTAATCCTAGAATTGGGGATTTTGGGCTGGCCAAACTTTTTCCAGAAAATGTCACTCACATTAGTACTAGAGTGGCAGGAACCATGGGATACATGGCACCGGAGTATGCATTGTCAGGAAGGTTAACAGAAAAGGCTGATGTCTACAGTTTTGGTGTGCTCATGCTTGAAATTATTAGTGGTAGAAGTAGTAGCAAGGCTGCATTTGGGGAGAATCTTCTGGTCCTAGTGGAATGGACATGGAAACTGAAGGAAGACAACAGTCTGTTGGACATGGTTGATCCAGAACTGGTTGAGTACCCTGAGGATGAGGTTTCATGTTTCATCAAGGTGGCACTGCTGTGCATCCAAGCGGTGTCTTGGCAGAGGCCCACCATGACGCAAGTTCTGCAAATGCTCTCCAAAGAGGTCAGCCCGGATTCAATGGCGCTAACACGGCCAGGCTACTACAAGCATTCAGATGGTGGGATTGGCCATTCATGGATGACTTCTTCTGAGGTACCAAAAAGAAAGCAACTGATAAATCCCCTTGTCACTTCGACCCGTGTAAGCAGCTGTTCTGTAAGCATTACACAGGTGCTGCCTAGGTGA 1119 44.77 MKLCKMKNGDHHQKEAEEIAGKNVRLFSYNALRSATRNFHPSNRIGRGGFGIVYRGVLRDGTQVAVKSLSVESKQGKREFLTEIDMISNIQHPCLVRLIGCCVGGGSRMLVYEYLENKSLSSALLSSKSKRSVLDWPKRAAICTSTAHGLAFLHEEAEPRIIHRDIKASNILLDGDLNPRIGDFGLAKLFPENVTHISTRVAGTMGYMAPEYALSGRLTEKADVYSFGVLMLEIISGRSSSKAAFGENLLVLVEWTWKLKEDNSLLDMVDPELVEYPEDEVSCFIKVALLCIQAVSWQRPTMTQVLQMLSKEVSPDSMALTRPGYYKHSDGGIGHSWMTSSEVPKRKQLINPLVTSTRVSSCSVSITQVLPR* 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7166909 7169739 - Vvi6g608 Vvi6g608 788185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g608 372 PANTHER BNAC03G72920D PROTEIN 3 368 - -
Vvi6g608 372 CDD STKc_IRAK 45 311 - -
Vvi6g608 372 ProSiteProfiles Protein kinase domain profile. 39 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g608 372 SUPERFAMILY Protein kinase-like (PK-like) 21 309 IPR011009 -
Vvi6g608 372 ProSitePatterns Protein kinases ATP-binding region signature. 45 67 IPR017441 GO:0005524
Vvi6g608 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Vvi6g608 372 Pfam Protein tyrosine and serine/threonine kinase 42 309 IPR001245 GO:0004672|GO:0006468
Vvi6g608 372 SMART serkin_6 39 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g608 372 Gene3D Phosphorylase Kinase; domain 1 9 114 - -
Vvi6g608 372 Gene3D Transferase(Phosphotransferase) domain 1 115 321 - -
Vvi6g608 372 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 368 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g608 Vvi8g884 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76710 PF07714 PK_Tyr_Ser-Thr 6.10E-46 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g608 - - vvi:100241635 709.138