Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g618 ATGGAGGTCTCATGGGAAGCAAGTGTTACAGATTCTATCAATACGGTTTATCTTCTCTTTTCAGCTTACTTGGTCTTTGTGATGCAGCTTGGGTTTGCCATGCTCTGTGCTGGCTCAGTCCGAGCCAAGAACGCCATGAACATCATGCTCACCAATGTGGTCGACGCCGTTGTCGGCAGCATCTCCTACTACTTCTTTGGCTTCGCCTTTGCCTTTGGCTCTGGCTCCGCCTCCAACCCCTTCATTGGCACCGACTATTTCGCTCTCAAAGACATCCCTAATTCCACCTACGACTACAGCTACTTCCTCTACCAGTGGGCTTTCGCCATAGCCGTGGCTGGCATCACCAGCGGCTCCATCGCTGAACGCACCCAGTTCAGCGCCTATCTCATCTTCTCCTTCTTCCTCACTGGCTTTGTCTACCCTGTCGTGGTCCACTGGCTCTGGTCTTCCAACGGGTGGCTCAGCCCCAGCTCGAGCAACCTCCTGTTTGGTTCCGGCGCAATCGACTTCGCCGGAAGCGGCGTTGTCCATTTAGTGGGCGGAATCGCCGGATTATGGGGTGCCTTCATTGAAGGCCCACGGGTCGGGCGGTTTGATGCATTTGGTAAACCCGTACCCATGCGAGGTCACAACGCCACTCTAGTGGTGCTTGGCACATTCTTGCTGTGGTTCGGGTGGTTTGGGTTCAACCCAGGTTCATTCGACAAAATCCTCGTCTCCTACCCAACCACTACCGACCAAGGTAACTGGACCGCCGTGGGCCGCACAGCAGTGACCACAACACTGGCTGGTTCAGCTGCCGGAATTGCTACCTTGTTCGGCAGGCGACTGATAGTGGGTCACTGGGACGCACTGGATGTTTGCAATGGGGTTCTGGGTGGGTTTGTGGCCATCACATCAGGCTGCTCCGTGGTCGAGCCATGGGCTGCAATTGTATGCGGGTTCTTCTCAGCCTGGGTCCTGATTGGTCTCAACATCCTGGCCCTGAAACTCGGCTTTGATGACCCATTAGAGGCTACCCAGTTGCATGGTGGGTGTGGAGCCTGGGGTTTGATCTTCACTGGCTTACCATATGGGTTGTTCATGGGTGGGGGTTGGGGCTTGATCGGATGCCAGGCGGTTGAGGTTTTGGCGATCATATGCTGGGTCAGTATCACAATGGGCCCACTTTTCTACGCTCTGCATAAGCTTAAGATATTAAGGATATCCACTGAGGAGGAGGTTGCAGGGCTTGACATCTCCAGCCATGGTGGCTACGCCTACGTTGCCCACCCAGACGAGGGTCATCCTCGGTTTTATGCGGACTACATGAGGTTGCAAGATCAGAGAACTTGA 1338 54.63 MEVSWEASVTDSINTVYLLFSAYLVFVMQLGFAMLCAGSVRAKNAMNIMLTNVVDAVVGSISYYFFGFAFAFGSGSASNPFIGTDYFALKDIPNSTYDYSYFLYQWAFAIAVAGITSGSIAERTQFSAYLIFSFFLTGFVYPVVVHWLWSSNGWLSPSSSNLLFGSGAIDFAGSGVVHLVGGIAGLWGAFIEGPRVGRFDAFGKPVPMRGHNATLVVLGTFLLWFGWFGFNPGSFDKILVSYPTTTDQGNWTAVGRTAVTTTLAGSAAGIATLFGRRLIVGHWDALDVCNGVLGGFVAITSGCSVVEPWAAIVCGFFSAWVLIGLNILALKLGFDDPLEATQLHGGCGAWGLIFTGLPYGLFMGGGWGLIGCQAVEVLAIICWVSITMGPLFYALHKLKILRISTEEEVAGLDISSHGGYAYVAHPDEGHPRFYADYMRLQDQRT* 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7240083 7241481 + Vvi6g618 Vvi6g618 788195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g618 445 PANTHER AMMONIUM TRANSPORTER 1 443 - -
Vvi6g618 445 ProSitePatterns Ammonium transporters signature. 170 195 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vvi6g618 445 PANTHER AMMONIUM TRANSPORTER 1 MEMBER 3 1 443 - -
Vvi6g618 445 Gene3D Ammonium transporter AmtB like domains 3 439 IPR029020 -
Vvi6g618 445 SUPERFAMILY Ammonium transporter 10 403 - -
Vvi6g618 445 Pfam Ammonium Transporter Family 17 422 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vvi6g618 445 TIGRFAM amt: ammonium transporter 14 422 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g618 K03320 - pvy:116129597 771.155