Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g623 ATGGATTCACAAGAGGTATGGAACTTGGAGAATGGTGAGGTAAAGGGGTTGAGCAACAAGGATGGACCACATTTAATAAGAAACGCCCACACCATGTCCTCTTCATCCTTACGTAAGAGGTCGGATCCGATGCTTCTCCCCAAGGTTAGATGCCGAGTCCTCAGACAATTCCTCAACAATCTTCAAGAGGTCATCCTTGGGACCAAGCTTTGTCTGCTCTTCCCAGCCATTCCTTTAGCAGTCTTAGCGAAGTGTTACCAATTTGGAAGACCTTGGATTTTTGCTCTGAGTTTAATGGGGCTGACACCGCTAGCTGAACGTGTCAGCTTTCTAACTGAACAGATAGCATACTTCACTGGTCCAACAGTTGGAGGGCTTCTCAATGCAACATGTGGTAATGCAACAGAACTGATAATAGCCCTATTTGCCCTTCACCAAAAGAAAATCCTTGTGTTGAAATACTCTCTTCTGGGTTCCATTCTCTCCAACCTCCTCCTTGTTCTTGGGACCTCTCTCTTGTTTGGAGGCTTGGCTAACCTAAAAAAGGAGCAACTTTATGATAGAAAACAAGCTGATGTGAACTCGCTGCTTCTACTGCTGGGATTGCTATGCCATGTGCTTCCTTTGATGTTCAAATACGCTGCATGGACAGACACATTCACAGCCATTTCCACTCTTCAGTTCTCAAGAGCCAGCAGCATTTTGATGCTTACAACATATGTTGCATACCTCATCTTCCAGCTCAAAACCCACCGCCAACTTTTCGAATCACAAGAGGAAGATGAAGATGGTGATGATGAAAAGGCTCTGATTGGATTCTGGAGTGCATTTAGCTGGTTGGTTGGCATGACAGTTATCATAGCACTGTTATCTGAGTATGTTGTGGGCACAATTGAGGCTGCCTCGGATTCCTGGGGCGTTTCTGTTAGCTTTATCAGCATTATTTTGCTGCCAATAGTGGGAAACGCTGCAGAACATGCTGGGTCAATCATATTTGCTTTCAAAAACAAGTTGGACATATCTTTGGGGGTTGCTTTGGGGTCTGCAACACAGATTTCCATGTTTGTGGTTCCACTCTGTGTGATCGTGGCTTGGATCATGGGGGTTGCTATGGATCTTGATTTCAGTCTCCTTGAAACCGGCTCTCTCGCCTTCGCCATCATTATCACAGCCTTCGCTTTGCAGGATGGAACTTCACATTACATGAAAGGAGTGGTTCTTTCTCTTTGCTACATAGTAATAGCTGCATGCTTTTTTGTTCATAAAAATCCAAGTGTCCATCAATCAACTACTGACAGCTTGAGAGTGGTCCAATCATCGACCGGAGTCCTGACTGCTTAA 1341 44.89 MDSQEVWNLENGEVKGLSNKDGPHLIRNAHTMSSSSLRKRSDPMLLPKVRCRVLRQFLNNLQEVILGTKLCLLFPAIPLAVLAKCYQFGRPWIFALSLMGLTPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATELIIALFALHQKKILVLKYSLLGSILSNLLLVLGTSLLFGGLANLKKEQLYDRKQADVNSLLLLLGLLCHVLPLMFKYAAWTDTFTAISTLQFSRASSILMLTTYVAYLIFQLKTHRQLFESQEEDEDGDDEKALIGFWSAFSWLVGMTVIIALLSEYVVGTIEAASDSWGVSVSFISIILLPIVGNAAEHAGSIIFAFKNKLDISLGVALGSATQISMFVVPLCVIVAWIMGVAMDLDFSLLETGSLAFAIIITAFALQDGTSHYMKGVVLSLCYIVIAACFFVHKNPSVHQSTTDSLRVVQSSTGVLTA* 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7301237 7304370 - Vvi6g623 Vvi6g623 788200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g623 446 Gene3D - 267 420 IPR044880 -
Vvi6g623 446 Gene3D - 121 259 IPR044880 -
Vvi6g623 446 Pfam Sodium/calcium exchanger protein 92 248 IPR004837 GO:0016021|GO:0055085
Vvi6g623 446 Pfam Sodium/calcium exchanger protein 277 417 IPR004837 GO:0016021|GO:0055085
Vvi6g623 446 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 5 432 IPR004713 GO:0006812|GO:0008324|GO:0016021
Vvi6g623 446 PANTHER VACUOLAR CATION/PROTON EXCHANGER 5 432 - -
Vvi6g623 446 TIGRFAM caca2: calcium/proton exchanger 56 419 - -
Vvi6g623 446 TIGRFAM cax: calcium/proton exchanger 75 419 IPR004798 GO:0006816|GO:0015369
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g623 K07300 chaA, CAX; Ca2+:H+ antiporter - vvi:100243275 823.542
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi6g623 Vvi8g893 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g623 . . . . . . . . Cmo01g00692 . Cma01g00661 . Car01g00604 . . . . . . . . . . . . . . . . . . . . . . Lsi02g01286 . . . . . . . . . . . . . . . . . . . Cpe02g01178 . . . . . . . Cla03g00075 Cam03g0076 Cec03g0075 Cco03g0081 Clacu03g0077 Cmu03g0699 Cre03g0393 . Csa01g02509 . Cme12g00092
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi10g142 ECH 1 401 Antiporters AT5G46110 80.3 3.1e-180 628.2
Vvi1g49 . 34 406 Antiporters AT5G46110 72.6 2.9e-149 525.4
Vvi1g48 . 14 338 Antiporters AT5G46110 68.0 2.9e-125 445.7
Vvi10g29 . 46 392 Antiporters AT5G54800 82.2 6.4e-159 557.4
Vvi19g471 ECH 1 248 Antiporters AT5G54800 89.9 1.1e-123 440.3
Vvi14g1332 ECH 229 607 Antiporters AT3G01550 63.8 1.4e-126 449.9
Vvi17g761 ECH 59 408 Antiporters AT3G01550 60.2 1.1e-110 397.1
Vvi17g761 ECH 9 408 Antiporters AT5G33320 69.1 1.5e-142 503.1
Vvi14g1332 ECH 212 607 Antiporters AT5G33320 58.3 2.1e-120 429.5
Vvi10g29 . 1 393 Antiporters AT1G61800 75.4 2.4e-164 575.5
Vvi19g471 ECH 1 249 Antiporters AT1G61800 88.0 7.0e-124 441.0
Vvi10g29 . 38 391 Antiporters AT5G17630 51.5 1.0e-90 330.9
Vvi19g471 ECH 1 247 Antiporters AT5G17630 56.4 1.1e-71 267.7
Vvi19g743 ECH 17 439 Antiporters AT3G13320 71.9 3.4e-164 575.1
Vvi12g752 ECH 3 379 Antiporters AT3G13320 77.0 1.6e-161 566.2
Vvi9g957 . 50 431 Antiporters AT3G13320 73.4 4.9e-155 544.7
Vvi6g623 ECH 58 429 Antiporters AT3G13320 50.5 5.6e-95 345.1
Vvi8g893 ECH 1 401 Antiporters AT2G38170 70.7 1.2e-154 543.5
Vvi6g623 ECH 5 425 Antiporters AT2G38170 66.1 3.6e-148 521.9
Vvi8g893 ECH 1 369 Antiporters AT3G51860 73.7 3.0e-147 518.8
Vvi6g623 ECH 27 395 Antiporters AT3G51860 73.0 1.1e-144 510.4
Vvi12g752 ECH 4 346 Antiporters AT3G51860 50.1 3.1e-83 306.2
Vvi19g743 ECH 70 410 Antiporters AT3G51860 50.1 1.3e-81 300.8
Vvi8g893 ECH 2 403 Antiporters AT5G01490 61.4 5.0e-131 464.9
Vvi6g623 ECH 31 432 Antiporters AT5G01490 59.6 1.2e-129 460.3
Vvi19g743 ECH 9 439 Antiporters AT1G55720 69.9 1.1e-157 553.5
Vvi12g752 ECH 3 375 Antiporters AT1G55720 74.1 3.7e-150 528.5
Vvi9g957 . 50 427 Antiporters AT1G55720 70.8 5.1e-144 508.1
Vvi8g893 ECH 33 402 Antiporters AT1G55720 50.1 6.3e-94 341.7
Vvi19g743 ECH 9 439 Antiporters AT1G55730 72.2 1.8e-170 595.9
Vvi12g752 ECH 2 375 Antiporters AT1G55730 77.9 1.1e-162 570.1
Vvi9g957 . 50 431 Antiporters AT1G55730 74.4 4.7e-158 554.7
Vvi8g893 ECH 26 401 Antiporters AT1G55730 51.7 2.9e-99 359.4
Vvi6g623 ECH 58 428 Antiporters AT1G55730 52.0 1.6e-97 353.6
Vvi14g373 . 8 539 Antiporters AT5G27150 78.2 1.6e-237 818.9
Vvi5g367 ECH 5 536 Antiporters AT5G27150 75.8 1.2e-229 792.7
Vvi7g214 ECH 13 537 Antiporters AT5G27150 73.2 6.4e-218 753.8
Vvi14g227 ECH 16 534 Antiporters AT5G27150 64.2 5.3e-188 654.4
Vvi19g594 . 13 513 Antiporters AT5G27150 60.8 1.2e-166 583.6
Vvi5g367 ECH 1 540 Antiporters AT3G06370 73.3 1.0e-218 756.5
Vvi14g373 . 2 540 Antiporters AT3G06370 71.2 8.3e-213 736.9
Vvi7g214 ECH 15 536 Antiporters AT3G06370 72.4 3.6e-208 721.5
Vvi14g227 ECH 21 533 Antiporters AT3G06370 61.0 4.9e-173 604.7
Vvi19g594 . 11 513 Antiporters AT3G06370 62.1 1.5e-161 566.6
Vvi19g594 . 9 514 Antiporters AT5G55470 74.3 1.4e-220 762.7
Vvi5g367 ECH 18 521 Antiporters AT5G55470 60.3 2.3e-167 585.9
Vvi14g373 . 15 522 Antiporters AT5G55470 58.9 7.3e-166 580.9
Vvi7g214 ECH 15 518 Antiporters AT5G55470 58.2 4.0e-164 575.1
Vvi14g227 ECH 1 522 Antiporters AT5G55470 55.4 1.0e-159 560.5
Vvi14g373 . 6 538 Antiporters AT3G05030 78.4 7.2e-241 830.1
Vvi5g367 ECH 7 534 Antiporters AT3G05030 77.3 1.0e-234 809.7
Vvi7g214 ECH 13 537 Antiporters AT3G05030 73.3 2.2e-218 755.4
Vvi14g227 ECH 16 534 Antiporters AT3G05030 63.7 7.8e-187 650.6
Vvi19g594 . 13 513 Antiporters AT3G05030 61.5 2.4e-167 585.9
Vvi9g469 ECH 102 662 Antiporters AT1G15460 71.8 2.1e-227 785.4
Vvi4g435 ECH 102 664 Antiporters AT1G15460 69.2 2.4e-226 781.9
Vvi11g419 ECH 102 673 Antiporters AT1G15460 67.5 5.4e-223 770.8
Vvi7g446 ECH 102 645 Antiporters AT1G15460 58.1 1.1e-178 623.6
Vvi17g758 . 102 646 Antiporters AT1G15460 57.6 4.1e-178 621.7
Vvi5g225 ECH 102 662 Antiporters AT1G15460 54.7 1.8e-173 606.3
Vvi5g225 ECH 3 710 Antiporters AT3G06450 71.2 2.6e-302 1034.6
Vvi7g446 ECH 3 712 Antiporters AT3G06450 71.0 1.1e-300 1029.2
Vvi17g758 . 3 691 Antiporters AT3G06450 70.5 6.1e-288 986.9
Vvi9g469 ECH 6 653 Antiporters AT3G06450 56.6 1.0e-218 756.9
Vvi11g419 ECH 6 649 Antiporters AT3G06450 56.9 1.5e-217 753.1
Vvi4g435 ECH 6 646 Antiporters AT3G06450 56.1 3.4e-214 741.9
Vvi7g446 ECH 1 713 Antiporters AT2G47160 78.1 0.0e+00 1134.0
Vvi5g225 ECH 1 713 Antiporters AT2G47160 74.3 0.0e+00 1086.6
Vvi17g758 . 1 720 Antiporters AT2G47160 73.0 0.0e+00 1075.5
Vvi9g469 ECH 1 652 Antiporters AT2G47160 58.8 2.2e-221 765.8
Vvi4g435 ECH 6 646 Antiporters AT2G47160 58.7 5.5e-220 761.1
Vvi11g419 ECH 1 645 Antiporters AT2G47160 57.6 8.7e-218 753.8
Vvi9g469 ECH 1 665 Antiporters AT1G74810 70.5 1.6e-269 925.6
Vvi11g419 ECH 1 675 Antiporters AT1G74810 67.7 8.6e-268 919.8
Vvi4g435 ECH 7 664 Antiporters AT1G74810 67.9 4.6e-261 897.5
Vvi7g446 ECH 7 645 Antiporters AT1G74810 58.1 3.1e-217 751.9
Vvi17g758 . 7 646 Antiporters AT1G74810 58.9 1.2e-216 750.0
Vvi5g225 ECH 7 645 Antiporters AT1G74810 57.3 1.0e-215 746.9
Vvi7g446 ECH 1 711 Antiporters AT3G62270 80.8 0.0e+00 1156.7
Vvi5g225 ECH 1 698 Antiporters AT3G62270 78.0 0.0e+00 1104.4
Vvi17g758 . 1 707 Antiporters AT3G62270 76.0 0.0e+00 1088.9
Vvi9g469 ECH 1 652 Antiporters AT3G62270 61.5 1.3e-226 783.1
Vvi11g419 ECH 1 645 Antiporters AT3G62270 59.1 2.1e-224 775.8
Vvi4g435 ECH 6 646 Antiporters AT3G62270 60.6 4.6e-224 774.6
Vvi4g435 ECH 1 668 Antiporters AT4G32510 68.0 1.5e-272 935.6
Vvi11g419 ECH 1 662 Antiporters AT4G32510 66.9 6.7e-265 910.2
Vvi9g469 ECH 1 662 Antiporters AT4G32510 65.8 9.1e-254 873.2
Vvi7g446 ECH 1 646 Antiporters AT4G32510 54.7 2.0e-208 722.6
Vvi5g225 ECH 1 632 Antiporters AT4G32510 55.2 7.8e-205 710.7
Vvi17g758 . 1 647 Antiporters AT4G32510 53.5 3.9e-204 708.4
Vvi4g435 ECH 7 663 Antiporters AT5G25430 68.8 1.5e-264 909.1
Vvi11g419 ECH 7 667 Antiporters AT5G25430 66.5 9.7e-256 879.8
Vvi9g469 ECH 7 660 Antiporters AT5G25430 65.3 1.0e-241 833.2
Vvi7g446 ECH 7 645 Antiporters AT5G25430 55.8 4.1e-206 714.9
Vvi17g758 . 7 646 Antiporters AT5G25430 55.0 1.9e-203 706.1
Vvi5g225 ECH 7 651 Antiporters AT5G25430 54.4 1.8e-201 699.5
Vvi1g567 . 1 1137 Antiporters AT2G01980 65.9 0.0e+00 1392.9
Vvi1g567 . 1 737 Antiporters AT1G14660 64.3 2.0e-270 928.7
Vvi11g199 . 1 523 Antiporters AT5G11800 82.3 4.3e-231 797.7
Vvi16g519 . 51 577 Antiporters AT5G11800 69.3 1.1e-191 666.8
Vvi16g519 . 1 575 Antiporters AT5G51710 80.3 1.0e-245 846.3
Vvi11g199 . 1 496 Antiporters AT5G51710 72.9 3.0e-189 658.7
Vvi11g199 . 1 523 Antiporters AT2G19600 86.9 1.0e-240 829.7
Vvi16g519 . 43 562 Antiporters AT2G19600 70.8 4.9e-187 651.4
Vvi3g617 . 139 554 Antiporters AT1G49810 77.0 4.2e-180 627.9
Vvi3g617 . 1 571 Antiporters AT3G19490 78.8 3.0e-245 844.7
Vvi6g203 . 1 211 Antiporters AT5G12860 91.0 6.2e-107 385.2
Vvi3g977 . 1 338 Antiporters AT5G64280 71.3 3.1e-143 505.8
Vvi3g977 . 1 338 Antiporters AT5G64290 82.0 2.2e-160 562.8
Vvi6g181 . 1 295 Antiporters AT4G28390 89.8 2.4e-150 528.9
Vvi12g276 . 1 248 Antiporters AT4G28390 77.6 2.6e-125 445.7
Vvi17g435 . 11 303 Antiporters AT4G28390 61.6 1.0e-105 380.6
Vvi6g181 . 1 297 Antiporters AT3G08580 89.2 9.1e-150 526.9
Vvi12g276 . 1 247 Antiporters AT3G08580 72.5 2.6e-112 402.5
Vvi17g435 . 10 303 Antiporters AT3G08580 56.9 2.6e-96 349.4
Vvi6g181 . 1 297 Antiporters AT5G13490 91.6 3.5e-157 551.6
Vvi12g276 . 1 247 Antiporters AT5G13490 74.9 5.8e-120 427.9
Vvi17g435 . 11 303 Antiporters AT5G13490 61.1 1.8e-105 379.8
Vvi17g435 . 7 299 Antiporters AT5G17400 81.1 2.1e-141 498.8
Vvi6g181 . 1 282 Antiporters AT5G17400 63.8 1.2e-104 376.7
Vvi12g276 . 1 234 Antiporters AT5G17400 56.9 4.8e-85 311.6
Vvi14g247 . 1 419 Antiporters AT1G08960 72.3 2.1e-163 572.8
Vvi7g312 . 23 535 Antiporters AT2G47600 69.7 1.1e-206 716.5
Vvi9g366 . 1 303 Antiporters AT1G79900 71.1 2.6e-120 428.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001241 1 5 1 1 1 2 4 3 2 3 3 3 4 3 3 5 2 2 4 2 3 3 2 2 2 1 2 3 2 2 76