Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g633 ATGTTGGGTCCCTCCCAATTGGTACCCAATGGCCCATGCACTGCAACTCAACATCATTCCCACGAGCTCTCATGGCTTTTGCAATTCACTCTTGTCTCTCTCTCAGTCTCTTCTGTCTTTCCAAATGAAGAAGAAAAAAACAGAGACATTCTCTGCCGCTTAATCCCAATCTATCTAATGAGAATATCACCCTCCTCCGTCACCATCGCCTTCATTTTCGTTGCCCTCCTCTCCTCACCGGCACTGCCGGTCAACGCCCTCGGCTCCTCCTCCACCATTGCCGTCTCCTATGCCACCGGCACCGTCTGCGGCATCCTCGCCGGCCATCCTTTACAAGAAATTCAATGCTACAGACAAGGCCACATCATCAACCTCCAACCCCAAGTTTCCTACGAAGCCATTTCCGGCGGCCAGAGCTTCTTCTGCGGCCTGAGGTCCGGCGGCTTCAGCCTTCTCTGCTGGGACACCACCTTCAGCAATGCTAGTTTTCGCCCAAAGCGCATATACTATAGTGACAGGGTTGGGTTAACCGATTTAACGGTGGGTAATGCTCAGGTTTGTGCATTGGAGGCCAGCAGTGGAGGGGTCAAATGTTGGAGAGGAGAGAGAGGTGGGTCTATGTTTCCGACGCCGGAAGTGGGTTCAGAGTTTCAGAAAATAACGTCTGGAGGAGGGTTCACATGTGGGATTTTGAAGAACAACAGCAGAGTTTTGTGTTGGGGTGTCAGCACAGTTGGAGCTGAGATTCAAAGACAGTTTGGTGATCTCTCAATGTCGAGCTTAGTTGCTGGCAATTCTCATGCATGTGGGTTGACAGACACAGGGATTTTGGTTTGTAAAGGGAACAATGATACTGGGCAGCTTGGTTTTCCCTCTGGTTCAGCTTTCGAATTCTCAGGTCTTGCATTGGGAGCTAATCATACCTGTGCAATTCAAAGAAGAAATGGTATGGTGGAGTGCTGGGGAGGAGGAACAAAACTATCGGAATTTGGCAGCCAACATATAAAAAACGTTTCCTTTGAATCAATTGTTGCTGGTTTGGATTTCACATGTGGATTGACATCCAGGAACTTATCAGTGATATGCTGGGGACCTGGGTGGACTGGGAAGCGTACTTCAGGGAGTGTCTTTCCACTTGAGATGATCATTCCGGGTCCATGTGTTGAAGCTTCTTGTAGCGTTTGTGGTATGTATCCGAATTCTGAGGTTCTGTGTGATGGGTCTGGGAATATATGTAAGTCTTGTGAATTTGATCTTCCAATTCCATTGCCATTGCCAATTTTGCCGCCACAACCATCGGAAGATTTACAACCAAATTCTCCGGCATCTCCTGCCCCAAACAGGCTGTTGTTGGCCTTTTTGATTGTTGGGTCAATTGGACTTTTTGCAGGCATATGTAGTATTGTCTACTGCCTCTGGACTGGAGTCTGCGCCTTCTTTCACAAGCAGATTTATGATTCTGCACAACCAAACGTCAGCAGGGCCAATGCCGATAGTTTCACGGTGATAGACAATGGTTCCAATGTCCAAGTTTCAAAATCATCCTCCATCAAGCGCCAGAGCTCTCTAGCATTGAGGCGTCAAAGGAGCGGGCCATCATCAAGGGCTGTTGGGGACAGGGCTGAAAATTTTTCTCTATCAGAACTTGCTGCTGCCACTAACATGTTCTCATTGGAAAACAAGATTGGTGGTGGAAGCTTTGGTACGGTTTACAAAGGCAAGCTTGCAGATGGTAGGGAAGTGGCCATCAAAAGGGGAGAGACTGGTTCAAGGATAAAGAAGTTCCAAGAGAAGGAAATTGCATTTGAATCAGAACTAGCATTGTTGTCGCGGCTTCACCACAAGCATTTGGTGGGGCTTGTGGGATTCTGCGAAGAAAATGATGAGAGGCTTCTGGTTTATGAGTACATGAGTAATGGATCTCTCCATGATCATCTGCATAGCAAGAATAATATTCTAGAGAGTAGCAACATTTTAAATTCTTGGAAAATGAGGATTAAAATCGCCTTAGATGCTGCTAGGGGAATTGAGTATCTCCACGATTATGCTGTGCCACCTATAATTCATAGAGACATTAAGTCCTCTAACATTCTTCTTGATGCAAATTGGACTGCAAAAGTATCGGATTTTGGGCTATCATTAATGGGGCCAGACTCTAACCAGGAGTATATGTCAACCAGGGCAGCCGGTACAGTTGGGTATATAGATCCCGAGTACTATGTGCTAAATGTTTTGACAGCAAAGAGTGATGTCTATGGCTTAGGAGTGGTATTGTTAGAGCTTTTGACAGGAAAGAGAGCTGTATTCAAGGAAGAAGTGGAGGGAGCTCTTCCTATTGGGATAGTGGACTATGCAGTACCACAGATAACAGTGGGTGAGCTATGGAGGGTATTGGATATGAGGGTTGGTCCACCAGAGGCAAATGAGGCCGAGGCGGTTGAGCTGATGGCTAACATGGCTATGCATTGTGTGAAGTTGGAGGGAAAGGAAAGGCCCACCATGACTGACATTGTAGCCAATCTGGAGAGGGCACTGGCTCTTTGTGAGGAGAGCCGCGCTAGCATCTCTAGTACTTCATTCTCCATTATCTCAGAATGA 2598 46.92 MLGPSQLVPNGPCTATQHHSHELSWLLQFTLVSLSVSSVFPNEEEKNRDILCRLIPIYLMRISPSSVTIAFIFVALLSSPALPVNALGSSSTIAVSYATGTVCGILAGHPLQEIQCYRQGHIINLQPQVSYEAISGGQSFFCGLRSGGFSLLCWDTTFSNASFRPKRIYYSDRVGLTDLTVGNAQVCALEASSGGVKCWRGERGGSMFPTPEVGSEFQKITSGGGFTCGILKNNSRVLCWGVSTVGAEIQRQFGDLSMSSLVAGNSHACGLTDTGILVCKGNNDTGQLGFPSGSAFEFSGLALGANHTCAIQRRNGMVECWGGGTKLSEFGSQHIKNVSFESIVAGLDFTCGLTSRNLSVICWGPGWTGKRTSGSVFPLEMIIPGPCVEASCSVCGMYPNSEVLCDGSGNICKSCEFDLPIPLPLPILPPQPSEDLQPNSPASPAPNRLLLAFLIVGSIGLFAGICSIVYCLWTGVCAFFHKQIYDSAQPNVSRANADSFTVIDNGSNVQVSKSSSIKRQSSLALRRQRSGPSSRAVGDRAENFSLSELAAATNMFSLENKIGGGSFGTVYKGKLADGREVAIKRGETGSRIKKFQEKEIAFESELALLSRLHHKHLVGLVGFCEENDERLLVYEYMSNGSLHDHLHSKNNILESSNILNSWKMRIKIALDAARGIEYLHDYAVPPIIHRDIKSSNILLDANWTAKVSDFGLSLMGPDSNQEYMSTRAAGTVGYIDPEYYVLNVLTAKSDVYGLGVVLLELLTGKRAVFKEEVEGALPIGIVDYAVPQITVGELWRVLDMRVGPPEANEAEAVELMANMAMHCVKLEGKERPTMTDIVANLERALALCEESRASISSTSFSIISE* 866
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7383810 7386408 - Vvi6g633 Vvi6g633 788210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g633 865 ProSitePatterns Serine/Threonine protein kinases active-site signature. 687 699 IPR008271 GO:0004672|GO:0006468
Vvi6g633 865 Gene3D - 85 251 IPR009091 -
Vvi6g633 865 Gene3D - 252 426 IPR009091 -
Vvi6g633 865 Pfam Regulator of chromosome condensation (RCC1) repeat 260 287 - -
Vvi6g633 865 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 64 863 IPR044815 GO:0004674
Vvi6g633 865 SMART serkin_6 556 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g633 865 SUPERFAMILY RCC1/BLIP-II 88 325 IPR009091 -
Vvi6g633 865 ProSitePatterns Protein kinases ATP-binding region signature. 562 594 IPR017441 GO:0005524
Vvi6g633 865 Gene3D Phosphorylase Kinase; domain 1 515 636 - -
Vvi6g633 865 Pfam Protein kinase domain 557 839 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g633 865 Gene3D Transferase(Phosphotransferase) domain 1 637 859 - -
Vvi6g633 865 SUPERFAMILY Protein kinase-like (PK-like) 540 841 IPR011009 -
Vvi6g633 865 ProSiteProfiles Protein kinase domain profile. 556 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g633 865 CDD STKc_IRAK 562 843 - -
Vvi6g633 865 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 64 863 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g633 Vvi13g498 ECH
Vvi6g633 Vvi13g51 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76711 PF00069 Pkinase 2.30E-45 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g633 - - vvi:100852616 1538.86