Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g636 ATGAGAGCTTCTAGAAGACTCATAGGAGGCTCCGAGCTGGATGTGACCGGTCGGTCGATACCCTCAACACTTTCTCGGTGGGCAGTGATAGAGTCACTCACCGCTTTCTCCACCACTGTCACCAAAAGGGAGAGAGGAAAGAAACGCGAAAAGCGTGACCTGAGGAATCTCGATCCGGTGGGGGGCGTCGCAGTGGATGATCGTACACGTGGCGTTCTAGGACTCGAGAAGTTAAAAGCAGAGGTGAAAAACCAGAGCCTGCGTTCATTGAACCAGGTTTCAATTTTTTTCTTCTCTTCCTCTGGGGTTTGGCTAGTGGTGTGGCATTTCTGCAAGTGGGGTTTGAGAAAGAGACTTTGTGGAGGTCTTACGGAGAAAGAGCTTTCCATGTGCAGTGGTTCCAAGAGGAAACTCTGTCCCACCATGGAGGGTGAAGTTCAGAAACAGGAGGCGTTTTGCTGTAATTTTTCTCTTTTGCTGGAATTATCTGCTGCCAATGATCTGATTGGCTTTAGAACTGCTGTTGAAGAAGAGGGCCGTGATGTTGATGAGGCCAGCTTTTGGTATGGGAGGAGAAATGGGTCTAAGAAGATGGGGTTTGAAGAGAGGACACCCCTCATGATCGCTGCCATGTTCGGAAGCAAGGAAGTTTTGAATTATATCCTTGCAACCAACCGTGTTGATGTTAACAGAGCTTGTGGTTCGGACGGTGCCACTGCTCTTCACTGTGCTGTTGCAGGTGCCTCAGCTTCCCTGCCTGAGGTTGTGAAGCTCTTGCTTGATGCTTCTGCAGATGCTAATTGTGTTGATGCTAGGGGGAACCGGCCCGGAGATCTTATTGCTCCTATCCTTAGCTTGACCTTCAATTCAAGGAAGAAGGCTGTGGAGGTCATGCTGAAGGGTAGTAGTAGTATTGGGGAAGCATTTCAACGGGTTTATGGGACTCCTGAGAAGAAAGAGTATCCTGTTGATCTCTCTCTTCCAGACATTAAAAATGGTATATATGGGACAGATGAGTTCAGAATGTACACATTCAAGGTAAAGCCTTGCTCAAGGGCTTACTCTCACGATTGGACAGAGTGTCCGTTTGTACACCCAGGGGAAAACGCGAGGAGGCGTGATCCACGGAAATATCATTACAGCTGTGTTCCCTGCCCAGAGTTCCGAAAGGGGAGCTGCCGGCAGGGGGATGCCTGTGAGTATGCTCATGGAATTTTTGAGTGCTGGCTTCATCCAGCCCAGTATCGGACCCGTCTCTGCAAAGATGAGACTGGGTGCACTAGAAGGGTTTGTTTCTTTGCTCACAAGCCTGAAGAGCTTCGCCCGTTGTATGCTTCCACAGGTTCAGCAGTGCCATCTCCCAGATCATTCTCAGTGGGAGCTTCTTCTTTGGACATGTCTCCAATTAGCCCGCTTGCCCTTGGTTCTTCGTCTGTCTTGATGCCTCCTACTTCAACACCACCTATGACACCCTCCGGAGTGTCTTCTCCTATGGGTGGAACCATGTGGCAGAACCAGCCTAACATCATACCTCCTAACCTGCAGCTTTCTGGTAGCAGGTTGAAATCTTCATTAAGTGCTAGGGACATGGATTTGGATGTTCTTGGGCTAGAAAGTCATCGTCGCCGGCAGCAGCAGTTGATGGATGAAATGGCTGGACTTTCTTCCCCATCCAGCTGGAACAGTGAATTAAATAGGCTTGGAGGAATGAAGCCGACTAACCTTGAAGATATTTTTGGATCTCTCGATCCTACAATTTTGCCTCAATTACAGGGACTTTCAATGGATGCTGCAGCACCCCAGCTGCACCTCTCATCTTCACCTGTCAGAGGGTCAGCATCATTTGGGATGGACCCATCTGGCTCTGCGACAGCAGCAGTTTTGAATTCAAGGGCAGCTGCCTTTGCAAAGCGGAGCCAGACTGTAGTGCCTTCCCCACTTTCTGATTGGGGCTCACCTGATGGCAAATTAGACTGGGGTATTCAGGGAGAGGAGCTGAACAAGCTGAGGAAATCGGCTTCTTTTGGGTTCAGAAGCAATGGCAGCAGTTATGCAGCACAAGCAGCCTCTGTGCCAGCAGCTGCGGATGAGCCAGATGTGTCTTGGGTTCAGTCCCTGGTGAAGGAAGCCCCATCAGCAAGACCTGGGCAATTCGGTTATGAGGAGCAGCATCAATATCATCTCAATAGTGGAGGTTCTGAGATACTCCCACCTTGGGTCGAGCAGTTGTGCGTGGAGCAGGAGCAGATGGTGGCATGA 2259 49.98 MRASRRLIGGSELDVTGRSIPSTLSRWAVIESLTAFSTTVTKRERGKKREKRDLRNLDPVGGVAVDDRTRGVLGLEKLKAEVKNQSLRSLNQVSIFFFSSSGVWLVVWHFCKWGLRKRLCGGLTEKELSMCSGSKRKLCPTMEGEVQKQEAFCCNFSLLLELSAANDLIGFRTAVEEEGRDVDEASFWYGRRNGSKKMGFEERTPLMIAAMFGSKEVLNYILATNRVDVNRACGSDGATALHCAVAGASASLPEVVKLLLDASADANCVDARGNRPGDLIAPILSLTFNSRKKAVEVMLKGSSSIGEAFQRVYGTPEKKEYPVDLSLPDIKNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCRQGDACEYAHGIFECWLHPAQYRTRLCKDETGCTRRVCFFAHKPEELRPLYASTGSAVPSPRSFSVGASSLDMSPISPLALGSSSVLMPPTSTPPMTPSGVSSPMGGTMWQNQPNIIPPNLQLSGSRLKSSLSARDMDLDVLGLESHRRRQQQLMDEMAGLSSPSSWNSELNRLGGMKPTNLEDIFGSLDPTILPQLQGLSMDAAAPQLHLSSSPVRGSASFGMDPSGSATAAVLNSRAAAFAKRSQTVVPSPLSDWGSPDGKLDWGIQGEELNKLRKSASFGFRSNGSSYAAQAASVPAAADEPDVSWVQSLVKEAPSARPGQFGYEEQHQYHLNSGGSEILPPWVEQLCVEQEQMVA* 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7418556 7422171 + Vvi6g636 Vvi6g636 788213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g636 752 PANTHER UNKEMPT FAMILY MEMBER 144 751 IPR045234 -
Vvi6g636 752 SUPERFAMILY Ankyrin repeat 199 278 IPR036770 -
Vvi6g636 752 ProSiteProfiles Ankyrin repeat profile. 236 271 IPR002110 GO:0005515
Vvi6g636 752 ProSiteProfiles Zinc finger C3H1-type profile. 384 406 IPR000571 GO:0046872
Vvi6g636 752 ProSiteProfiles Ankyrin repeat region circular profile. 236 270 - -
Vvi6g636 752 SMART c3hfinal6 414 437 IPR000571 GO:0046872
Vvi6g636 752 SMART c3hfinal6 379 405 IPR000571 GO:0046872
Vvi6g636 752 Gene3D - 380 442 - -
Vvi6g636 752 Pfam Ankyrin repeats (3 copies) 197 269 IPR002110 GO:0005515
Vvi6g636 752 SMART ANK_2a 236 268 IPR002110 GO:0005515
Vvi6g636 752 SMART ANK_2a 201 231 IPR002110 GO:0005515
Vvi6g636 752 Gene3D - 159 301 IPR036770 -
Vvi6g636 752 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 144 751 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g636 Vvi13g57 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14955 PF12796 Ank_2 9.80E-09 CL0465 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g636 - - vvi:100265670 1168.3