Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g676 ATGGCTTCGAACACGCCGAACCTAGAGTGCCGGATGTACGAAGCCAAGTATCCAGAGGTGGACATGGCGGTGATGATTCAGGTGAAGAACATCGCTGACATGGGAGCCTACGTCTCCTTATTGGAGTATAACAACATCGAAGGCATGATTCTATTCTCAGAGCTCTCTCGCCGTCGGATTCGTAGCGTGAGTAGTCTCATCAAAGTCGGCAGGCAAGAGCCTGTCATGGTGCTTAGGGTTGACAAAGAAAAAGGGTATATTGATCTGAGCAAAAGAAGGGTTTCGGAAGAGGATATTCAAGTCTGTGAGGAGAGATACAATAAGAGCAAGCTTGTTCATTCCATTATGCGCCATGTTGCTGAGACTATGAATCTTGATCTGGAGGATCTGTATATTCATGTTGGGTGGCCTCTGTACCGAAAATATGCGCATGCTTTTGAGGCGTTTAAATTGATTGTGACTGATCCTGATTCAGTTCTGAATTCCCTAACTCGTGAAATCAAAGAAATTGGTCCTGATGGCCAAGAGGTGACCAAAGTGATCCCTGCTATGTCAGAGGAGGTGAAGGATTCTTTGATCAAGAACATTAGAAGGCGAATGACACCACAACCATTAAAAATCCGTGCTGACATAGAAATGAAATGTTTCCAGTTTGATGGTGTTCTTCACATCAAGGAAGCTATGCGTAAAGCTGAAGCTGCCGGCAATAAAGACTGCCCTGTGAAAATAAAATTGGTTGCTCCTCCCCTCTATGTTCTAACCACTCAAACTCTTGACAAGGAGCAAGGAATGTTAATTCTTAATAATGCAATCACTGCTTGTACCAAAGAAATTGAACAACACAAGGGAAAACTAATTGTGAAGGAAGCACCAAGAGCTGTGAGTGAAAGAGATGATAAACTACTAGCTGAGCATATGGCAAAACTTCGGCAGGACAATGAAGAGGTTAGTGGTGATGAAGGTGAGGAAGAGGAGGAAGATACAGGAATGGGAGACGCTGATTTGGAAAGTTCAGGTCCTGGACTGACAGAGTAA 1035 43.96 MASNTPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRQEPVMVLRVDKEKGYIDLSKRRVSEEDIQVCEERYNKSKLVHSIMRHVAETMNLDLEDLYIHVGWPLYRKYAHAFEAFKLIVTDPDSVLNSLTREIKEIGPDGQEVTKVIPAMSEEVKDSLIKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKEAMRKAEAAGNKDCPVKIKLVAPPLYVLTTQTLDKEQGMLILNNAITACTKEIEQHKGKLIVKEAPRAVSERDDKLLAEHMAKLRQDNEEVSGDEGEEEEEDTGMGDADLESSGPGLTE* 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7872488 7879409 - Vvi6g676 Vvi6g676 788253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g676 344 PANTHER BNAC04G04870D PROTEIN 4 337 - -
Vvi6g676 344 MobiDBLite consensus disorder prediction 295 344 - -
Vvi6g676 344 Gene3D EIF_2_alpha 205 327 IPR024055 -
Vvi6g676 344 Pfam S1 RNA binding domain 18 92 IPR003029 GO:0003676
Vvi6g676 344 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 4 337 IPR011488 GO:0003723|GO:0003743
Vvi6g676 344 Pfam Eukaryotic translation initiation factor 2 alpha subunit 130 260 IPR011488 GO:0003723|GO:0003743
Vvi6g676 344 SUPERFAMILY eIF-2-alpha, C-terminal domain 203 319 IPR024055 -
Vvi6g676 344 ProSiteProfiles S1 domain profile. 21 92 IPR003029 GO:0003676
Vvi6g676 344 SUPERFAMILY Nucleic acid-binding proteins 10 92 IPR012340 -
Vvi6g676 344 Coils Coil 306 326 - -
Vvi6g676 344 Gene3D - 6 94 IPR012340 -
Vvi6g676 344 SUPERFAMILY eIF2alpha middle domain-like 94 199 IPR024054 -
Vvi6g676 344 CDD S1_IF2_alpha 18 93 IPR044126 GO:0003723
Vvi6g676 344 SMART S1_6 19 92 IPR022967 -
Vvi6g676 344 MobiDBLite consensus disorder prediction 295 315 - -
Vvi6g676 344 MobiDBLite consensus disorder prediction 316 332 - -
Vvi6g676 344 Gene3D Translation initiation factor 2; subunit 1; domain 2 95 199 IPR024054 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g676 Vvi13g92 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g676 K03237 - vvi:100243244 650.588