Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g686 ATGGGCGGATCTTCTCCCTGCGCTTCCTGCAAGTTGTTGAGACGCCGCTGCGCCAAGGACTGCATCTTTGCTCCTTACTTCCCTTCCGATGACCCTCACAAATTTGCCATTGTTCACAAGGTTTTCGGTGCTAGCAATGTCAGCAAAATGTTGCAGGAGCTTCCCGTTCACCAGAGGATAGATGCAGTGAGCAGTTTAGTTTATGAAGCAAATGCAAGAGTGCGAGACCCGGTTTATGGATGTGTTGGGGCGATTTCTTACTTGCAGAATCAAGTATCTCAGCTACAAATGCAGCTGGCAGTGGCTCAAACCGAGATACTTTGCATCCAGATGCAGCAAGAGGAGCCTGCCTTACCAACTCAGATGGATCAAGATGAGAAATCGCTTCTTCTATCCAATAACAGCTTCAACAACCTTCAACACTACCTCAGCTTTGCTTCTTCCAGCAATGTAATCCAAGATCCTCTAAAGAGAGAGTCTCTTTGGACCTAG 492 47.36 MGGSSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRIDAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQTEILCIQMQQEEPALPTQMDQDEKSLLLSNNSFNNLQHYLSFASSSNVIQDPLKRESLWT* 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7971773 7972539 + Vvi6g686 Vvi6g686 788263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g686 163 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Vvi6g686 163 Coils Coil 85 105 - -
Vvi6g686 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 1 160 - -
Vvi6g686 163 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Vvi6g686 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 160 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g686 Vvi13g101 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14959 PF03195 LOB 1.20E-42 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g686 - - vvi:100251897 326.25