Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g700 ATGGCGACCGACGCCACGCCCAAATTCCAAAACCGCGATTTTCGGCCGGTTCAGCCCGATTTCCACCCCGAAATCACTATGTCGGCTCACGACGGGCTCCATTTTTGGCAGTTCATGGTCGCCGGGTCCATTGCGGGTTGCGTCGAGCACATGGCGATGTTTCCGGTGGACACCATTAAGACCCGTATGCAAGTTCTTGGGCCGTGCCCAATTAAATCGGTCAGCCTTAGCCACGCCCTCCGGTCGATTTTGAAGACGGAAGGGCCCTCTGGCCTTTACCGGGGAATCGGCGCAATGGGTCTCGGCGCCGGACCGGCACATGCCGTGTATTTTTCGATTTATGAGATATTTAAGAAGTCTTTATCCGGTGGGAATCCGAATAATTCGGCCGCCCACGCCATCTCCGGCGTATTTGCGACGGTGGCAAGCGATGCGGTGTTTACGCCCATGGATATGGTGAAGCAGAGATTGCAGCTGAGTAGTAGTCCATATAAGGGGGTTTTGGATTGTGTGACGAGGGTTTTGAGAGAAGAGGGGTTTAAAGCTTTTTATGCTTCGTATAGGACTACTGTGTTGATGAATGCTCCCTTCACAGCAGTGCATTTTTCCACGTATGAGGCTGCAAAAAGGGGCTTGATGGAGGTTTCTCCTGACAGCGCCGATGATAACCGAGTGGTGGTTCATGCTACTGCTGGGGCTGCAGCTGGGGCATTGGCTGCTCTCTTGACAACACCGCTTGATGTGGTGAAGACTCAATTACAATGCCAAGGGATCTGCGGATGTGATAGATATAGTAGTGGTTCGATTAGGGACGTTCTTCGGACAATAGTGAAGAAGGATGGATACAGAGGGCTCATGAGAGGATGGATTCCAAGGATGCTCTTCCATGCTCCTGCTGCTGCAATATGCTGGTCTACATATGAAGCCTGGAAATCCATCTTCCAAGAGCTCAATGCTAAAAGTGATAGTGATGGAGGCACCTGA 984 51.73 MATDATPKFQNRDFRPVQPDFHPEITMSAHDGLHFWQFMVAGSIAGCVEHMAMFPVDTIKTRMQVLGPCPIKSVSLSHALRSILKTEGPSGLYRGIGAMGLGAGPAHAVYFSIYEIFKKSLSGGNPNNSAAHAISGVFATVASDAVFTPMDMVKQRLQLSSSPYKGVLDCVTRVLREEGFKAFYASYRTTVLMNAPFTAVHFSTYEAAKRGLMEVSPDSADDNRVVVHATAGAAAGALAALLTTPLDVVKTQLQCQGICGCDRYSSGSIRDVLRTIVKKDGYRGLMRGWIPRMLFHAPAAAICWSTYEAWKSIFQELNAKSDSDGGT* 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8129328 8133473 + Vvi6g700 Vvi6g700 788277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g700 327 ProSiteProfiles Solute carrier (Solcar) repeat profile. 223 313 IPR018108 -
Vvi6g700 327 Gene3D Mitochondrial carrier domain 14 161 IPR023395 -
Vvi6g700 327 PANTHER MITOFERRIN-1-RELATED 1 322 - -
Vvi6g700 327 ProSiteProfiles Solute carrier (Solcar) repeat profile. 33 120 IPR018108 -
Vvi6g700 327 Pfam Mitochondrial carrier protein 33 122 IPR018108 -
Vvi6g700 327 Pfam Mitochondrial carrier protein 223 316 IPR018108 -
Vvi6g700 327 Pfam Mitochondrial carrier protein 128 214 IPR018108 -
Vvi6g700 327 Gene3D Mitochondrial carrier domain 162 325 IPR023395 -
Vvi6g700 327 PRINTS Mitochondrial carrier protein signature 38 51 IPR002067 GO:0055085
Vvi6g700 327 PRINTS Mitochondrial carrier protein signature 51 65 IPR002067 GO:0055085
Vvi6g700 327 PRINTS Mitochondrial carrier protein signature 142 160 IPR002067 GO:0055085
Vvi6g700 327 PRINTS Mitochondrial carrier protein signature 184 202 IPR002067 GO:0055085
Vvi6g700 327 PRINTS Mitochondrial carrier protein signature 232 254 IPR002067 GO:0055085
Vvi6g700 327 PANTHER MITOCHONDRIAL CARRIER PROTEIN, EXPRESSED 1 322 - -
Vvi6g700 327 ProSiteProfiles Solute carrier (Solcar) repeat profile. 127 211 IPR018108 -
Vvi6g700 327 SUPERFAMILY Mitochondrial carrier 31 308 IPR023395 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g700 Vvi8g316 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g700 K15113 - vvi:100853238 647.121