Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g715 ATGGGCATTAACCCTATTCCACATTATGATATTAACACCGAAGATTATTTAAATACTTTTTGGAGAAAAGAAACCACGTGGCACGACAGCACACAAATCGCAATTGTCCGCATGCATCCAACTGCAGAGAAACTCAGCCAATGGAAAGAGAAGGCTTCTCCCTTTCACATGGGTTCTTCCTCTGGGAGCTTAGAGACCTCTGCAAACTCGCATCCCCTTTTCTCTTTCTCCTCTTTCATGTCCACTTCCTACTCCGACCTCCTCACGTCCGCCGACGAGGATCCCAGGACGGGGTCCGGAGTGCCGAAGTTCAAGTCAATTCCTCCGCCTTCGCTGCCCATCTCCCCGCCTCCGATCTCTCCTTCTTCTTACTTTTCTATTCCTGCAGGGTTGAGCCCAGCTGAACTTCTCGACTCGCCTGTGCTTCTCTCCACTTCTAACATTCTGCCTTCTCCGACAACAGGAACTTTTCCATCTCAGGGCTTCAATTGGAGGAGTAATTCGAACAGCAACCAGCAGGATGTCAAAAGGGAAGATAAAAACTACCTAGATTTTTCGTTCCAACCCCAGGCAAGGCCTTCCACGACTTCAGCAAGCATGTTTCAGCCTTCAACCACCACGATTACTACTGAACAAGCCTTGAGAGGACAGCAACCAGCTTGGAGTTTTCAAGAACCAACCAAGCAAGATAGTTTTTCATCAGAAAAAACTACGATTGCCACGATCCAAACTAACACTCAGAGCAACGGAAACGGCAACAATGGATTCCAATCGGATTATGGCAGTTACCACGCATCATCTCAGTCAATTAGAGAGCAGAGAAGATCAGAGGACGGGTACAATTGGAGGAAATATGGGCAGAAACAAGTGAAAGGAAGCGAAAACCCGAGAAGCTATTACAAGTGCACATACCCCAATTGCCCAACTAAGAAGAAAGTGGAAAGATCCTTGGAAGGCCAGGTCACTGAGATTGTCTACAAAGGTACTCATAACCATCCCAAGCCTCAGTCTACCAGGAGATCATCATTATCATCTTCTCAAACAATTCAAGCTTCCAATCCTCCCAACAATGAAGTTCCTGATCAGCCATTTAATTCATCAATCTCCATGGGGGATGATGACTTTGAGCAGAGCTCTCAGAAGAGTAAATCAGGAGGAGATGACTTCGATGAAGATGAACCTGAGGCCAAAAGATGGAAAAAGGAGAGTGAAAATGAAGGTATATCAGCCCCTGGGAGTAGAACAGTCAGAGAACCTAGAGTTGTTGTTCAAACAACCAGTGACATCGATATCCTCGACGATGGCTATAGATGGAGGAAATATGGACAGAAAGTTGTCAAGGGAAATCCAAATCCCAGGAGCTACTATAAGTGCACGAACCCAGGATGTCCCGTGAGAAAGCATGTCGAGAGAGCCTCCCACGACCTCAGGGCAGTGATAACAACCTACGAGGGGAAGCACAACCATGATGTGCCGGCAGCGCGAGGCAGCGGCAGCCACTCCGTCAACAGGCCATTGCCATTGCCCGACACCACCGCCGCCGCCACCACCAACAACAATATGCCAATGGCAATCAGGCCTTCAATCATGACCCATCTCCCCAACAACTCAACCACCAACCCTCTTCGCCATCCACAGCACCAGGACAATGTGTTCTCCAGAACCAAAGAAGAGCCCAGAGACGACATGTTATTCGAGTCTCTGCTCTGTTGA 1713 48.1 MGINPIPHYDINTEDYLNTFWRKETTWHDSTQIAIVRMHPTAEKLSQWKEKASPFHMGSSSGSLETSANSHPLFSFSSFMSTSYSDLLTSADEDPRTGSGVPKFKSIPPPSLPISPPPISPSSYFSIPAGLSPAELLDSPVLLSTSNILPSPTTGTFPSQGFNWRSNSNSNQQDVKREDKNYLDFSFQPQARPSTTSASMFQPSTTTITTEQALRGQQPAWSFQEPTKQDSFSSEKTTIATIQTNTQSNGNGNNGFQSDYGSYHASSQSIREQRRSEDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLEGQVTEIVYKGTHNHPKPQSTRRSSLSSSQTIQASNPPNNEVPDQPFNSSISMGDDDFEQSSQKSKSGGDDFDEDEPEAKRWKKESENEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSHSVNRPLPLPDTTAAATTNNNMPMAIRPSIMTHLPNNSTTNPLRHPQHQDNVFSRTKEEPRDDMLFESLLC* 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8290024 8295109 - Vvi6g715 Vvi6g715 788292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g715 570 MobiDBLite consensus disorder prediction 154 171 - -
Vvi6g715 570 MobiDBLite consensus disorder prediction 331 375 - -
Vvi6g715 570 Gene3D WRKY domain 419 485 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi6g715 570 SUPERFAMILY WRKY DNA-binding domain 424 492 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi6g715 570 MobiDBLite consensus disorder prediction 326 419 - -
Vvi6g715 570 MobiDBLite consensus disorder prediction 270 284 - -
Vvi6g715 570 Pfam WRKY DNA -binding domain 277 333 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi6g715 570 Pfam WRKY DNA -binding domain 433 489 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi6g715 570 ProSiteProfiles WRKY domain profile. 427 492 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi6g715 570 MobiDBLite consensus disorder prediction 90 115 - -
Vvi6g715 570 MobiDBLite consensus disorder prediction 530 559 - -
Vvi6g715 570 SUPERFAMILY WRKY DNA-binding domain 272 335 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi6g715 570 ProSiteProfiles WRKY domain profile. 271 335 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi6g715 570 MobiDBLite consensus disorder prediction 211 269 - -
Vvi6g715 570 MobiDBLite consensus disorder prediction 376 407 - -
Vvi6g715 570 MobiDBLite consensus disorder prediction 154 175 - -
Vvi6g715 570 Gene3D WRKY domain 262 336 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi6g715 570 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 90 547 IPR044810 GO:0003700
Vvi6g715 570 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 90 547 - -
Vvi6g715 570 MobiDBLite consensus disorder prediction 211 305 - -
Vvi6g715 570 MobiDBLite consensus disorder prediction 530 548 - -
Vvi6g715 570 SMART WRKY_cls 432 491 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi6g715 570 SMART WRKY_cls 276 334 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g715 Vvi8g338 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14961 PF03106 WRKY 3.50E-25 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g715 K13424 - vvi:100243352 912.524