Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi6g738 | ATGTCCAGAGAAAGGGAGAGATTATTTGATGAAGTAGGAAAGAAGATCAAGAGAGAAACTGATCATAAATCTTCTCATATGGGAAGGAGACAGTTGCTGGGGCCTCCTGGGACCTTGAACACTATCACCCCTTGTGCTGCATGTAAGCTTCTGAGAAGAAGATGTGCTGAAGAGTGCCCTTTCTCCCCCTATTTCTCCCCCCATGAACCTCACAAGTTTGCTGCTGTCCACAAAGTTTTTGGTGCCAGCAACGTCTCCAAGATGCTCATGGATGTTGCAGAGAACCAAAGAGCAGATGCCGTGAACAGCCTGGTTTTTGAAGCAAACTTGAGGCTCAGAGATCCAGTCTATGGATGCATGGGTGCAATCTCAGCTTTACAACATCAAGTTCATTCTCTACAAACCGAACTTAATGCAGTGAAAGCTGAGATACTGAAATACAAGTATAGAGAAGCTGCTTCCACCATCATTTCTTCTAGTCATGCTGCTCTAGTTTCTTCGGAGTCCGATTCGATATCTGCAGTTTCACTGCCATCATCTCTTCCTCCACCTCCTCTACCTCTACCCCCACCCACACCATCAGTTGTTTCTTCTTCACCTCCTTCTGCATCTTCTTTGTATACAATACTGCCTTCAAGCACAACAGGCTATAGCTCTATTACAAGTGATAACATTCCATACTTCGACTGA | 690 | 44.93 | MSRERERLFDEVGKKIKRETDHKSSHMGRRQLLGPPGTLNTITPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLMDVAENQRADAVNSLVFEANLRLRDPVYGCMGAISALQHQVHSLQTELNAVKAEILKYKYREAASTIISSSHAALVSSESDSISAVSLPSSLPPPPLPLPPPTPSVVSSSPPSASSLYTILPSSTTGYSSITSDNIPYFD* | 230 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 8584133 | 8585865 | - | Vvi6g738 | Vvi6g738 | 788315 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi6g738 | 229 | ProSiteProfiles | LOB domain profile. | 43 | 144 | IPR004883 | - | |
Vvi6g738 | 229 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 19 | 229 | - | - | |
Vvi6g738 | 229 | Pfam | Lateral organ boundaries (LOB) domain | 44 | 141 | IPR004883 | - | |
Vvi6g738 | 229 | MobiDBLite | consensus disorder prediction | 176 | 203 | - | - | |
Vvi6g738 | 229 | PANTHER | LOB DOMAIN PROTEIN | 19 | 229 | - | - | |
Vvi6g738 | 229 | MobiDBLite | consensus disorder prediction | 178 | 197 | - | - | |
Vvi6g738 | 229 | Coils | Coil | 123 | 143 | - | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14962 | PF03195 | LOB | 1.10E-39 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi6g738 | - | - | vvi:100262112 | 379.022 |