Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g738 ATGTCCAGAGAAAGGGAGAGATTATTTGATGAAGTAGGAAAGAAGATCAAGAGAGAAACTGATCATAAATCTTCTCATATGGGAAGGAGACAGTTGCTGGGGCCTCCTGGGACCTTGAACACTATCACCCCTTGTGCTGCATGTAAGCTTCTGAGAAGAAGATGTGCTGAAGAGTGCCCTTTCTCCCCCTATTTCTCCCCCCATGAACCTCACAAGTTTGCTGCTGTCCACAAAGTTTTTGGTGCCAGCAACGTCTCCAAGATGCTCATGGATGTTGCAGAGAACCAAAGAGCAGATGCCGTGAACAGCCTGGTTTTTGAAGCAAACTTGAGGCTCAGAGATCCAGTCTATGGATGCATGGGTGCAATCTCAGCTTTACAACATCAAGTTCATTCTCTACAAACCGAACTTAATGCAGTGAAAGCTGAGATACTGAAATACAAGTATAGAGAAGCTGCTTCCACCATCATTTCTTCTAGTCATGCTGCTCTAGTTTCTTCGGAGTCCGATTCGATATCTGCAGTTTCACTGCCATCATCTCTTCCTCCACCTCCTCTACCTCTACCCCCACCCACACCATCAGTTGTTTCTTCTTCACCTCCTTCTGCATCTTCTTTGTATACAATACTGCCTTCAAGCACAACAGGCTATAGCTCTATTACAAGTGATAACATTCCATACTTCGACTGA 690 44.93 MSRERERLFDEVGKKIKRETDHKSSHMGRRQLLGPPGTLNTITPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLMDVAENQRADAVNSLVFEANLRLRDPVYGCMGAISALQHQVHSLQTELNAVKAEILKYKYREAASTIISSSHAALVSSESDSISAVSLPSSLPPPPLPLPPPTPSVVSSSPPSASSLYTILPSSTTGYSSITSDNIPYFD* 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8584133 8585865 - Vvi6g738 Vvi6g738 788315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g738 229 ProSiteProfiles LOB domain profile. 43 144 IPR004883 -
Vvi6g738 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 19 229 - -
Vvi6g738 229 Pfam Lateral organ boundaries (LOB) domain 44 141 IPR004883 -
Vvi6g738 229 MobiDBLite consensus disorder prediction 176 203 - -
Vvi6g738 229 PANTHER LOB DOMAIN PROTEIN 19 229 - -
Vvi6g738 229 MobiDBLite consensus disorder prediction 178 197 - -
Vvi6g738 229 Coils Coil 123 143 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g738 Vvi13g134 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14962 PF03195 LOB 1.10E-39 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g738 - - vvi:100262112 379.022