Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g742 ATGGAGAGTAAAGGGGCTGTGTTGATGAACAGATATGAATTAGGAAGATTGCTAGGGCAAGGTACCTTTGCTAAGGTTTACTATGCCAGGAATCTTAAAACTGGCCAGAGTGTGGCCATTAAAGTGATAGACAAAGAGAAGGTTGTGAAGGTAGGGCTCAAAGATCAGATCAAGCGAGAAATATCTGTTATGAAACTGGCTAGACACCCTAATGTTTTGCAGCTTTATGAGGTTATGGCCACCAAAAGTAAGATCTACTTTGTTATGGAATATGCTAAAGGTGGTGAGCTCTTTAAGAAGGTGGCTAAAGGGAAGCTAAAGGAGGAAGTTGCGAAGATTAGTAAGGCAGAGTTTAAGTGCCCTAATTGGTTCTCACCAGATGTACGCAGGTTGCTTCAAAAGATATTGGATCCAAATCCCAATACTCGAATTTCCATTGCCAAAATCAAGGAAAGTTCTTGGTTCAGAAGAGGATTGAAATCCAAACAGATAAAATCTGAAACAGGAAGCAAGGACATGGCTCCTTTGGATACAGATGCAGCTTCGGAGTTAGCCAAACCTACAAACCTGAATGCTTTCGATATCATCTCTATTTCTGCTGGTTTTGATCTGTCTGGCTTGTTCGAGGAACCTTGTCAAAAGAAAAAGGCAATATTTACTTTCAGAAAACCTGCTGCTGTCATCATCTCTCGACTGGAAGAAATTGCCAAGCATCTGAGGCTGAAAGTGATGAAGAAGGATGCAGGTTTCATGAAATTTGAGGGCCTGAAGGAAGGTAAGAAAGGAATCTTGTCTATTGATGCAGAGATTTTTGAGGTGACACCATCTTTTCATTTGGTGGAAGTAAAGAAGTCTAATGGAGATACGTTGGAATATCAGAAGCTACTGAAAGAAGATATAAGACCTGCTCTCCAAGATATCGTTTGGACTTGGCAAGGTGAGGAGCAGCAGCAACAACAACAGCTTTCCTGA 972 41.26 MESKGAVLMNRYELGRLLGQGTFAKVYYARNLKTGQSVAIKVIDKEKVVKVGLKDQIKREISVMKLARHPNVLQLYEVMATKSKIYFVMEYAKGGELFKKVAKGKLKEEVAKISKAEFKCPNWFSPDVRRLLQKILDPNPNTRISIAKIKESSWFRRGLKSKQIKSETGSKDMAPLDTDAASELAKPTNLNAFDIISISAGFDLSGLFEEPCQKKKAIFTFRKPAAVIISRLEEIAKHLRLKVMKKDAGFMKFEGLKEGKKGILSIDAEIFEVTPSFHLVEVKKSNGDTLEYQKLLKEDIRPALQDIVWTWQGEEQQQQQQLS* 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8605254 8607990 + Vvi6g742 Vvi6g742 788319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g742 323 Pfam NAF domain 187 245 IPR004041 GO:0007165
Vvi6g742 323 CDD CIPK_C 191 305 - -
Vvi6g742 323 ProSiteProfiles NAF domain profile. 185 209 IPR018451 GO:0007165
Vvi6g742 323 Pfam Protein kinase domain 12 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g742 323 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 111 - -
Vvi6g742 323 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 112 321 - -
Vvi6g742 323 Gene3D Kinase associated domain 1, KA1 185 310 - -
Vvi6g742 323 SUPERFAMILY Protein kinase-like (PK-like) 9 157 IPR011009 -
Vvi6g742 323 PANTHER - 2 111 - -
Vvi6g742 323 PANTHER - 112 321 - -
Vvi6g742 323 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Vvi6g742 323 Gene3D Phosphorylase Kinase; domain 1 6 102 - -
Vvi6g742 323 Gene3D Transferase(Phosphotransferase) domain 1 108 156 - -
Vvi6g742 323 ProSiteProfiles Protein kinase domain profile. 12 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g742 Vvi13g140 ECH
Vvi6g742 Vvi8g370 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76716 PF00069 Pkinase 4.70E-23 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g742 - K07198 vvi:100244972 394.43