Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g746 ATGCCAGAGATCGAACGCGGCTCAGGGAGTGGGGCCGCTTCGGCTACCTCGTCGGAGAAGGCTTTGTTTGGGAAGTATGAGCTCGGCAGATTGCTGGGCTGTGGGGCGTTTGCGAAGGTGTATCATGCGAGGAATATCAGGACAGGGCAAAGTGTGGCCATTAAAGCAATATGTAAGAAGAAGATCGTTGGGAGCAACTTGATGGCGAATGTGAAACGGGAGATCTCTATCATGCGCCGGTTGCAGCACCCTCACATCGTGAAGCTGTATGAGGTGTTGGCGACCAAGACCAAGATCTATTGCCAGTTGATCTCCGCCGTCGGGTACTGCCATTCGCGGGGGGTGTTTCACCGGGATCTGAAACCGGAGAACCTCCTCGTTGACGAGAACGGGTGCTTGAAGGTTTCAGATTTCGGGCTCAGCGCCTTGACGGATCAGATTCGCCTCGACGGCCTCCTGCACACCTTGTGCGGCACTCCAGCTTACGTCGCGCCGGAGATTCTCACCAAGAAAGGCTACGATGGGGCGAAAGTGGATGTGTGGTCCTGCGGAGTCATCCTCTTCGTGTTGAACGCCGGTTACCTACCCTTCAACGATCCCAATCTCATGGCCATGTACAAGAAAATATACAAAGGCGAGTTCCGGTGCCCTAAATGGATGTCGCCGGACCTTAAACGTTTCCTTTCTCGCCTCCTCGACACCAACCCCAACACCAGGATCACCGTCGATGAAATCCTGCAGGACCCATGGTTCAGAAAAGGATACAAAGAGGTGAAGTTCCATGAAGAAGATTTCGGACTCAAATCCGAAAAAGAGGACCGAAGCCCCACGAACTTGAATGCCTTCGACATAATTTCGTTCTCGTCTGGTTTGAACTTGTCGGGTCTGTTCAATGACTCGTCCAAGTCGTCGCCGGATGACGACGAGCGATTTGTATCGGCCGAGCCCGTGGAGAAAATAATCGAGAAAATCGAGGAAATTGCCGAAGGTGAGAACCTGACGGTGAATTGGAAGAAGGAATGGGGAGTTGACCTGCAGGGACCAAATGGTAATTTCATAATCGGGGTTCAAATTGATCGATTAACCCATGATTTGGTCGTCGTGGAGGTTAGGAGGAGAGCCGGCGATGCAGCGGCCTACGCCGCCGCGTGGAAGGATAAGCTCCGGCCGGCGCTCGCCGGACTCATGTTCCAAGGACCGGAGACCCAAGATTATTTTATTTCGGTAAATATGTATTTTTGTATTTAA 1248 52.4 MPEIERGSGSGAASATSSEKALFGKYELGRLLGCGAFAKVYHARNIRTGQSVAIKAICKKKIVGSNLMANVKREISIMRRLQHPHIVKLYEVLATKTKIYCQLISAVGYCHSRGVFHRDLKPENLLVDENGCLKVSDFGLSALTDQIRLDGLLHTLCGTPAYVAPEILTKKGYDGAKVDVWSCGVILFVLNAGYLPFNDPNLMAMYKKIYKGEFRCPKWMSPDLKRFLSRLLDTNPNTRITVDEILQDPWFRKGYKEVKFHEEDFGLKSEKEDRSPTNLNAFDIISFSSGLNLSGLFNDSSKSSPDDDERFVSAEPVEKIIEKIEEIAEGENLTVNWKKEWGVDLQGPNGNFIIGVQIDRLTHDLVVVEVRRRAGDAAAYAAAWKDKLRPALAGLMFQGPETQDYFISVNMYFCI* 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8640303 8644470 - Vvi6g746 Vvi6g746 788323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g746 415 CDD CIPK_C 280 392 - -
Vvi6g746 415 PANTHER - 101 398 - -
Vvi6g746 415 PANTHER - 1 100 - -
Vvi6g746 415 Gene3D Phosphorylase Kinase; domain 1 15 100 - -
Vvi6g746 415 Pfam Protein kinase domain 98 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g746 415 Gene3D Kinase associated domain 1, KA1 275 398 - -
Vvi6g746 415 ProSiteProfiles NAF domain profile. 274 298 IPR018451 GO:0007165
Vvi6g746 415 Gene3D Transferase(Phosphotransferase) domain 1 101 252 - -
Vvi6g746 415 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 1 100 - -
Vvi6g746 415 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 101 398 - -
Vvi6g746 415 SUPERFAMILY Protein kinase-like (PK-like) 23 261 IPR011009 -
Vvi6g746 415 Pfam NAF domain 276 336 IPR004041 GO:0007165
Vvi6g746 415 SMART serkin_6 26 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g746 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 115 127 IPR008271 GO:0004672|GO:0006468
Vvi6g746 415 ProSitePatterns Protein kinases ATP-binding region signature. 32 59 IPR017441 GO:0005524
Vvi6g746 415 ProSiteProfiles Protein kinase domain profile. 26 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g746 Vvi8g375 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76717 PF00069 Pkinase 3.90E-42 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g746 - K12761 vvi:100250106 748.814