Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g757 ATGCTCGCAGCCTCCGCCGACTACAGTGGCTGGGAGGGCGGCCACGCCACCTTCTACGGCGGCGGTGACGCCTCCGGCACAATGGGAGGAGCGTGTGGGTATGGGAACTTGTACAGCCAGGGGTACGGAACCAACACAGCGGCGCTGAGCACCGCGCTGTTCAACAATGGGCTGAGCTGCGGAGCTTGTTTCGAAATGCGATGCGACAACGACCCCAGGTGGTGCCTCCCTGGCTCCATCACCGTCACTGCAACCAACTTTTGCCCCCCCAACTTCGCTTTGGCCAACAACAATGGCGGGTGGTGCAACCCTCCTCTCCAACACTTCGACCTCGCGGAGCCTGCCTTCCTCCAAATTGCACAGTACCGCGCTGGCATCGTCCCTGTTGCCTTCAGAAGGGTACCATGTGCGAAGAAAGGAGGAATCAGATTCACCATCAATGGCCACAAATACTTCATCCTAGTCCTGGTAACCAACGTCGCCGGCGCCGGCGACATCCACTCCGTCTCCATCAAGGGTTCCCGAACAGGGTGGCAAACCATGTCAAGAAACTGGGGCCAAAACTGGCAGAGCAACTCCGTTCTCAACGGCCAGAGCCTGTCCTTCATGGTCACCGCCGGCGACGGCAGAACCGTCACAAGCTTCAACGTCGCCCCGTCCGGCTGGCAGTTTGGCCGGACCTACGAGGGTAGCCAATTTTAG 702 59.83 MLAASADYSGWEGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEMRCDNDPRWCLPGSITVTATNFCPPNFALANNNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVAFRRVPCAKKGGIRFTINGHKYFILVLVTNVAGAGDIHSVSIKGSRTGWQTMSRNWGQNWQSNSVLNGQSLSFMVTAGDGRTVTSFNVAPSGWQFGRTYEGSQF* 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8696057 8697877 - Vvi6g757 Vvi6g757 788334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g757 233 PRINTS Expansin signature 41 55 IPR002963 GO:0009664
Vvi6g757 233 PRINTS Expansin signature 68 79 IPR002963 GO:0009664
Vvi6g757 233 PRINTS Expansin signature 80 90 IPR002963 GO:0009664
Vvi6g757 233 PRINTS Expansin signature 99 116 IPR002963 GO:0009664
Vvi6g757 233 PRINTS Expansin signature 116 129 IPR002963 GO:0009664
Vvi6g757 233 PRINTS Expansin signature 140 152 IPR002963 GO:0009664
Vvi6g757 233 PRINTS Expansin signature 152 173 IPR002963 GO:0009664
Vvi6g757 233 PRINTS Expansin signature 187 208 IPR002963 GO:0009664
Vvi6g757 233 PRINTS Expansin signature 216 232 IPR002963 GO:0009664
Vvi6g757 233 SUPERFAMILY Barwin-like endoglucanases 4 159 IPR036908 -
Vvi6g757 233 Pfam Expansin C-terminal domain 142 219 IPR007117 -
Vvi6g757 233 Gene3D - 140 233 IPR036749 -
Vvi6g757 233 PANTHER EXPANSIN-A15 5 233 IPR002963 GO:0009664
Vvi6g757 233 PANTHER EXPANSIN 5 233 - -
Vvi6g757 233 SUPERFAMILY PHL pollen allergen 138 230 IPR036749 -
Vvi6g757 233 SMART dpbb_1 46 131 IPR007112 -
Vvi6g757 233 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 151 230 IPR007117 -
Vvi6g757 233 Pfam Lytic transglycolase 46 130 IPR009009 -
Vvi6g757 233 Gene3D - 2 137 IPR036908 -
Vvi6g757 233 PRINTS Expansin/Lol pI family signature 10 25 IPR007118 GO:0005576
Vvi6g757 233 PRINTS Expansin/Lol pI family signature 28 46 IPR007118 GO:0005576
Vvi6g757 233 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Vvi6g757 233 PRINTS Expansin/Lol pI family signature 124 140 IPR007118 GO:0005576
Vvi6g757 233 PRINTS Expansin/Lol pI family signature 178 192 IPR007118 GO:0005576
Vvi6g757 233 PRINTS Expansin/Lol pI family signature 216 230 IPR007118 GO:0005576
Vvi6g757 233 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 29 141 IPR007112 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g757 Vvi8g386 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g757 - K20628 vvi:100263822 491.115