Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g767 ATGGGTTCGAGGATTTGCAAGAACAAATGGTGTGGTACGACAGCGTCGTTTGAATGGAAGAAGGGATGGACTATAAAATCCGGTGCAGTTGTCGACCTTTGCTACAAATGCGGTTCCGCTTATGAGAATTTAGTTTTCTGTGAAACCTTCCACCAAGAGGAAGACGGTTGGAGGCAATGCAGTTTATGCCACAAGCGTATTCATTGTGGATGCATTGTTTCAAACTATCAATTTGAGGCCCTTGATTATGGTGGTGTAAGGTGTTCTAGCTGTTTAAAGAGCCCTCAATGTCATCCGGTGAGATCAGATAATTTTATGCAATTGGGAAAAACTATGGAGGCCGATGAGCTCAACCACTTGCTTCAATCTCAGAAAGGTGATGCAAATGTATCTCTTGGACAAATCAAACAAGATGATAGCATGCATGCAGTTAGAGAAGTTAACACTATCTTTCCAACCACATCTCTACCATCCATTGGACCATCTGAATTTGCCAAATCAGACAATAGTATACCGATGTTAATGGGTAAAGATGTGTATGAATCATTGGTTCAACCATCATTGAATATCAGCTTGAGTTCCTCTTCAGGGCCTCCAAATTTTTTGTTACCTTTTCCTGGTAATGCTGTTGAAGGAATGGAACACAGCAAATCAGCTTTCACTTTTCAACAAGGGCAAAGGACACGGCATATACTGCCCAAACCTCCAAATTCTAGCCTCTCGATAGGTTCAGAGGCAAATAAAAGCATGGTTCCTGAGATTCGCATTGCAAGGCCACCTGCTGAGGGGAGGGGACGGAATCAGTTACTTCCTCGATACTGGCCAAGGATTACCGACCAGGAACTGCAGCAATTATCTGGAGATTTGAATTCCACCATTGTGCCATTATTCGAGAAGGTTCTGAGTGCTAGTGATGCTGGTCGAATTGGTCGTTTGGTCCTCCCAAAAGCATGTGCTGAAGCATATTTTCCTCCTATTTCTCAATCAGAAGGCCTTCCATTGAGGGTTCAGGATGCAAAGGGGACAGAGTGGACATTTCAATTCAGATTTTGGCCCAATAATAACAGCCGGATGTATGTTTTAGAAGGGGTAACCCCTTGCATACAGTCCATGCAATTACGAGCTGGTGATACTGTTATATTTAGTCGGATAGATCCTGGAAACAAACTTGTCATTGGATGTCGAAAGGCATCAAATTGTGTTGATGTGCAGGATGCCCAAACATCAGCCCTGTCTAATGGCACTATTTATGGAGGATCTTCTTTTTCTAGTGTCACTGAAAACCTGTCTACATGTGCAGGCAAGATGAATGAGGATTCTCCACAGCAATCGCTGCTGATTCCAGAGAAGAAGAGGACTCGAAATATTGGGTCCAAAAATAAGAGGTTGCTCATGCATAGTGAAGATGCCCTGGAGTTGAAAATAACATGGCAGGAAACACAGGACATACTTCGCCCACCTCCAAGTGTTGAGCCAAACATTGTCACTATTGAAGGCTATGAAATTGAGGAATATACTGAACCTCCGGTTTTTGGAAAAAGGAGTATATTCACAGCCCGACCATCTGGGGGGCAGGATCAATGGGGTCAGTGTGATAATTGCTCCAAATGGCGAAAGTTGCCCATAGATGTTTTTCTCCCTCTCAAGTGGACATGTGCAGACAACATTTGGGATTTGAGCAGGTGTTCATGTTCTGCACCAGATGAGTGGAATCCAAAGGAATCAGAAAGTCTTTCCAGACTTGGAAAGGATTACAAGAGGCAAAAATCCATGGAGAGCCATAAATTAGCCCAAGAAGGTGAGCCTACTGGCTTAGATGCTCTGGCCAATGCTGCAGTTCTAGAAGAAAATGGAGGTGACTCTGGTGAGCCATCAGCTGAAGCCACCACCAGACACCCTCGGCACCGCCCTGGCTGCTCGTGTATTGTATGTATTCAGCCCCCAAGTGGAAAGGGCAAGCACAAGTCCACATGCATATGCAATGTGTGCATGACTGTGAAGCGCCGATTCAGAACCCTAATGCTGCGCAAAAAGAAACGCCAATCAGAGCATGAAGCAGAATCTTCACAGATTAAGCACCAGATTCACCCCATCAATGAATCAGAAATAAGCGGCATGAAGAGGTAG 2127 44.48 MGSRICKNKWCGTTASFEWKKGWTIKSGAVVDLCYKCGSAYENLVFCETFHQEEDGWRQCSLCHKRIHCGCIVSNYQFEALDYGGVRCSSCLKSPQCHPVRSDNFMQLGKTMEADELNHLLQSQKGDANVSLGQIKQDDSMHAVREVNTIFPTTSLPSIGPSEFAKSDNSIPMLMGKDVYESLVQPSLNISLSSSSGPPNFLLPFPGNAVEGMEHSKSAFTFQQGQRTRHILPKPPNSSLSIGSEANKSMVPEIRIARPPAEGRGRNQLLPRYWPRITDQELQQLSGDLNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPLRVQDAKGTEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVIFSRIDPGNKLVIGCRKASNCVDVQDAQTSALSNGTIYGGSSFSSVTENLSTCAGKMNEDSPQQSLLIPEKKRTRNIGSKNKRLLMHSEDALELKITWQETQDILRPPPSVEPNIVTIEGYEIEEYTEPPVFGKRSIFTARPSGGQDQWGQCDNCSKWRKLPIDVFLPLKWTCADNIWDLSRCSCSAPDEWNPKESESLSRLGKDYKRQKSMESHKLAQEGEPTGLDALANAAVLEENGGDSGEPSAEATTRHPRHRPGCSCIVCIQPPSGKGKHKSTCICNVCMTVKRRFRTLMLRKKKRQSEHEAESSQIKHQIHPINESEISGMKR* 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8848746 8857227 - Vvi6g767 Vvi6g767 788344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g767 708 Pfam B3 DNA binding domain 297 396 IPR003340 GO:0003677
Vvi6g767 708 ProSiteProfiles B3 DNA-binding domain profile. 297 398 IPR003340 GO:0003677
Vvi6g767 708 Gene3D - 519 571 - -
Vvi6g767 708 CDD B3_DNA 295 396 IPR003340 GO:0003677
Vvi6g767 708 SUPERFAMILY DNA-binding pseudobarrel domain 294 393 IPR015300 -
Vvi6g767 708 Gene3D - 275 402 IPR015300 -
Vvi6g767 708 SMART B3_2 297 397 IPR003340 GO:0003677
Vvi6g767 708 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 706 - -
Vvi6g767 708 MobiDBLite consensus disorder prediction 676 708 - -
Vvi6g767 708 Pfam CW-type Zinc Finger 528 569 IPR011124 GO:0008270
Vvi6g767 708 ProSiteProfiles Zinc finger CW-type profile. 522 572 IPR011124 GO:0008270
Vvi6g767 708 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 706 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g767 Vvi8g235 ECH
Vvi6g767 Vvi8g394 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14966 PF02362 B3 1.90E-15 CL0405 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g767 - - vvi:100260494 1417.14