Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g776 ATGGTACAATTTTACTACTACGGTCACTCTCATATACCCTGTGCCAGACAACTTCCCATGAAGCTCTTTTCCACTTCTTTGGTTCTGCTTTTCCTTTTTGTGATAGCCATTCTTCTTCCTCTGGCAATTGCTGATCTGGATGCTGACAAGCAAGCCCTTCTTGACTTTGCTGATGCTGTTCCCCATCGCAGAAAACTCAACTGGAATTCTTCTACCCCAGTATGTACCTCATGGGTGGGCATCAATTGCACTGGTGATGGCAGCCGTGTGCGTGCCCTCCGGCTCCCTGGCATCGGACTTACTGGATCCATCCCAGCTACCACTCTTGGGAAGCTAGATGCCCTCGAGATTCTCAGCCTTCGATCCAATCTCCTCACTGGGAAGCTTCCCTCTGACATCCCCTCCCTTCCTTCCCTCCAGTATCTCTTCCTTCAACATAATAACTTCTCAGGTGATATTCCTGCCTCATTTTCTCCCCAACTCACTGTACTGGATCTCTCATTTAATTCCTTCACTGGCAACATTCCACTAACAATTTGGAATTTGACGCAACTCACTGGATTGAACCTCCAGAACAACAGCCTTTCTGGAGCCATACCTGATGTCAACCCCTCAAAACTCAAGCATTTGAACTTAAGCTACAATAATCTTAATGGTTCTATCCCATCTTCCCTTCAAAGATTCCCCAATTCTTCATTTGTAGGAAACTCTCTATTATGTGGACCTCCTCTGAATAATTGCTCCCTCACCCCCCTTTCACCTTCTCCTGCTCCTAGCTTCCCATCCCCACCAATGGCCTCTGAAAAACAAGGCTCCAAAAAGAAACTCAGTATGGGGATTATCATTGCCATTGCTGTTGGAGGGGCTGTGGTGCTGTTTCTTGTAGTTCTGATGATCTTCCTGTGCTGTTTGAGGAAAAAAGATAGTGAGGGCAGTGGTGTGGCGAAAGGGAAGGCTTCTGGTGGTGGCAGGAGTGAGAAACCCAAGGAGGAGTTTGGGAGTGGAGTGCAAGAGCCGGACAAAAACAAGCTGGTCTTCTTTGAAGGCTGTTCTTATAATTTTGATCTTGAGGATTTATTAAGGGCTTCAGCTGAAGTGCTGGGGAAAGGAAGTTATGGGACAGCATATAAGGCTGTCTTGGAGGAATCAACTACAGTAGTAGTGAAAAGATTGAAGGAAGTTGTGGTGGGAAAGAGGGATTTTGAACAGCAGATGGATATTGTGGGAAGGGTAGGGCAGCACCCAAATGTTGTGCCACTCCGTGCTTATTATTACTCCAAGGATGAGAAGCTCCTGGTTTATGACTATGTCTCAGGTGGCAGCTTATCGGCACTGTTGCATGGAAACAGGCCTACTGGACGATCTCCACTGGACTGGAATGCAAGAGTGAAGATCTCTCTTGGAATTGCAAGGGGAATCACCCACATTCACTCTGTAGGTGGTGGAAAGTTCACTCATGGAAATATCAAGTCCTCAAACGTTCTTCTGAACCAAGACTTTGAGGGGTGCATCTCTGATTTTGGCCTAACTCCTCTCATGAACTTCCCCGCCACCTCTTCTCGAAATGCAGGCTACCGTGCTCCTGAGGTGATTGAAAGCCGAAAGCACACTCATAAATCCGATGTTTACAGCTTTGGTGTCCTCCTACTTGAGATGCTGACTGGCAAAGCTCCACTCCAATCTCCAGGGCGAGATGACATGGTTGATCTCCCAAGGTGGGTCCAGTCTGTTGTCCGGGAGGAATGGACAGCTGAGGTTTTTGACATTGAGCTAATGAGGTATCAAAACATAGAAGAAGAGATGGTGCAGATGCTGCAACTTGCCATGGCCTGTGTGGCAAAGGTGCCTGATATGCGACCTAGCATGGATGAAGTTGTTAGAATGATCGAAGAGATCCGGCAATCTGACTCAGAGAACCGGCCATCTTCTGAAGAGAACAAGTCCAAGGACTCAAATGTGCAAACCCCATGA 1971 47.29 MVQFYYYGHSHIPCARQLPMKLFSTSLVLLFLFVIAILLPLAIADLDADKQALLDFADAVPHRRKLNWNSSTPVCTSWVGINCTGDGSRVRALRLPGIGLTGSIPATTLGKLDALEILSLRSNLLTGKLPSDIPSLPSLQYLFLQHNNFSGDIPASFSPQLTVLDLSFNSFTGNIPLTIWNLTQLTGLNLQNNSLSGAIPDVNPSKLKHLNLSYNNLNGSIPSSLQRFPNSSFVGNSLLCGPPLNNCSLTPLSPSPAPSFPSPPMASEKQGSKKKLSMGIIIAIAVGGAVVLFLVVLMIFLCCLRKKDSEGSGVAKGKASGGGRSEKPKEEFGSGVQEPDKNKLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAVLEESTTVVVKRLKEVVVGKRDFEQQMDIVGRVGQHPNVVPLRAYYYSKDEKLLVYDYVSGGSLSALLHGNRPTGRSPLDWNARVKISLGIARGITHIHSVGGGKFTHGNIKSSNVLLNQDFEGCISDFGLTPLMNFPATSSRNAGYRAPEVIESRKHTHKSDVYSFGVLLLEMLTGKAPLQSPGRDDMVDLPRWVQSVVREEWTAEVFDIELMRYQNIEEEMVQMLQLAMACVAKVPDMRPSMDEVVRMIEEIRQSDSENRPSSEENKSKDSNVQTP* 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8980534 8985737 - Vvi6g776 Vvi6g776 788353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g776 656 MobiDBLite consensus disorder prediction 322 336 - -
Vvi6g776 656 Pfam Leucine rich repeat 102 149 IPR001611 GO:0005515
Vvi6g776 656 Pfam Leucine rich repeat N-terminal domain 47 83 IPR013210 -
Vvi6g776 656 Gene3D Phosphorylase Kinase; domain 1 330 436 - -
Vvi6g776 656 ProSitePatterns Protein kinases ATP-binding region signature. 367 398 IPR017441 GO:0005524
Vvi6g776 656 MobiDBLite consensus disorder prediction 310 336 - -
Vvi6g776 656 PANTHER OS05G0588300 PROTEIN 23 656 - -
Vvi6g776 656 Pfam Leucine Rich Repeat 206 227 IPR001611 GO:0005515
Vvi6g776 656 SUPERFAMILY Protein kinase-like (PK-like) 365 639 IPR011009 -
Vvi6g776 656 Pfam Protein kinase domain 364 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g776 656 Gene3D Ribonuclease Inhibitor 204 248 IPR032675 -
Vvi6g776 656 Gene3D Transferase(Phosphotransferase) domain 1 437 655 - -
Vvi6g776 656 ProSiteProfiles Protein kinase domain profile. 361 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g776 656 SUPERFAMILY L domain-like 60 244 - -
Vvi6g776 656 PANTHER LRR RECEPTOR-LIKE KINASE 23 656 - -
Vvi6g776 656 MobiDBLite consensus disorder prediction 631 647 - -
Vvi6g776 656 CDD STKc_IRAK 367 632 - -
Vvi6g776 656 MobiDBLite consensus disorder prediction 631 656 - -
Vvi6g776 656 Gene3D Ribonuclease Inhibitor 47 158 IPR032675 -
Vvi6g776 656 Gene3D Ribonuclease Inhibitor 159 203 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g776 Vvi8g415 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76719 PF00069 Pkinase 1.00E-38 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g776 - - vvi:100241663 1187.56