Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g781 ATGTTTGATAATTCTGGTTACTTTTGCATTCAATCAAGAGTTTGGATGATTGAAGCCGTTCTGTTAGTGTGGTTATGTTGGTCTTCATCATTCATCGGAGCAAAGGCTACGGTTACCGACCCTGTCGAAGTGACGGCATTGCGGGCAATCAAGGAAAGTTTGGAAGATCCCATGAATAATTTGACTAATTGGAATCGAGGTGATCCATGTACATCGGAGTGGACAGGGGTTTTGTGCTTCAATACAACAATGAATGATAGCTATCTTCATGTTAAAGAATTGCAATTACTGAATATGCATCTGTCGGGAACTCTGTCGCCGGAGCTTGGCCGCTTATCTTATATGCAAATATTGGATTTTATGTGGAACAACATAACTGGGAGCATTCCAAAGGAGATAGGAAACATTACAACTTTAGAACTCTTGCTCCTGAATGGCAACAAGTTAACAGGTTCTTTACCAGAAGAGCTCGGTAATCTTCCGAACTTGGACAGAATACAGATTGACCAGAACCAAATATCAGGATCAATTCCTAGATCTTTTGCGAACTTGAATAAAACAAAGCACTTTCACATGAACAACAATTCAATTAGTGGGCAAATTCCATCCGAGCTCTCCAGATTGCCAGAACTTGTTCACTTTCTGCTTGACAATAACAACCTATCAGGATATCTTCCACCAGAATTCTCTGAAATGCCAAAGTTACTTATAGTTCAGCTCGACAACAACCACTTCAACGGGACATTTTTTCTTCCCAAACTACAATCAAGAAGTATGCTGATGAACTTGAGCCTCAGAAACTGCAGCTTGCAAGGAGAAATTCCCAACTTGAGCAAGATACCATATCTTGGTTATTTAGACCTCAGTTCGAACCAGCTTAATGGAACCATACCTCCTGGTAGATTTTCTGAGAATATTACAACGATAGATCTTTCTAACAACAATCTTACTGGAACAATTCCTGCGAACTTTTCGGGTCTTCCTCATCTACAAAAATTGTCACTGGAAAACAATTCATTGAGTGGTACTGTTTCATCCAGTATTTGGCAAAACAGGACTTCGAATGGAAATGAGACATATGTTGTGGATTTTCAGAATAATGATCTTTCAAATATTTCAGGCACTCTTGACCTTCCTCTCAATGTCACCGTCAGGCTTTATGGGAATCCCTTGTGCACAAACGAGAGCCTAGTTCAGTTCTGTGGATCTCAAAGTGAGGAGGAAAATGACACGCTTAACCCAGTAAACTCCACTGTTGATTGTACCGCCGTACGTTGCCCACTGTATTATGAAATTTCCCCAGCATCTCTCGAGATTTGTTTATGTGCTGCACCTCTTCTTGTTGGATATCGATTGAAAAGTCCTGGATTTTCTAATTTTCTCGCATACCAGAATATGTTTGAGTATTACCTTACCAGTGGTCTCAGCTTGAATCTTGATCAGCTGAAGATTGATTCAGTAGAATGGGAAAAAGGCCCTCGATTGAAAATGTACTTTAAACTTTTCCCTGACGATGTGAACAATTCCTCCGAGTTCAATAGCAGTGAGGTTCTACGAATCAGGGGCATGTTCACAGGATGGAACATTCCAGATAGTGACGTATTTGGACCTTATGAACTGATCAACTTCACGCTTACGGACATTTATAAGGATGTGATTGGCAGCTCTTCATCATCTGGTATAAGCACGGGGGCACTGGTTGGCATTATCCTGGGGACCATTGCAGTTGCAGTTACATTATCTGCAATTGTTTTTCTTCTTATCTTGAAAAACCGTTTGAAGAAATACCATACAATTTCAAGAAGACGTAAATCTACCAGGATCTCAATCAAAATTGATGGTGTGAAAGACTTCACTTACGGAGAAATGGCACTGGCTACAAACAATTTTAATGACTCTGCTGAAGTTGGCCAAGGAGGGTATGGAAAGGTCTATAAAGGTATTCTAGCTGATGGTACAGTTGTGGCTATAAAACGTGCACAAGAGGGATCACTGCAAGGTCAGAAGGAGTTCTTTACAGAAATAGAGTTATTATCAAGGGTACATCACCGAAACCTTGTGTCGTTGATTGGATATTGTGATGAAGAAGGTGAACAGATGTTGGTTTATGAATTCATGCCTAATGGCACATTGAGAGATCACCTTTCTGCTGCTAAATCTAAAGAACCTCTGAGTTTTGCAATGAGATTGAGCATTGCATTGGGTTCATCCAAGGGCATCCTTTACCTACATACTGAAGCCAACCCTCCAATATTCCACCGAGATGTCAAGGCAAGCAACATATTATTGGACTCTAAATTTATTGCAAAGGTTGCGGATTTTGGACTTTCAAGACTTGCCCCAGTTCCAGATATTGAAGGAAGTACACCAGCTCATGTATCTACAGTGGTAAAAGGAACTCCGGGATACCTTGATCCAGAATACTTCTTGACTCATAAGCTCACTGACAAGAGTGACGTTTATAGCCTTGGTGTTGTATTCCTAGAGCTCCTGACAGGGATGCATCCAATCTCACATGGCAAGAATATTGTTCGAGAGGTCAATGTTTCATATCAATCTGGTATGATCTTTTCGGTCATTGACAATCGAATGGGATCTTACCCTTCTGAATGTGTGGAGAAGTTTGTGAAACTGGCCCTCAAGTGTTGCCAGGAAGATACAGATGCTCGGCCTTCAATGGCACAGGTGGTACGCGAGCTTGAAAACATATGGCTTATGATGCCAGAGTCGGATACCAAAACAACAGAATCCTTGATCACTGAGCCTGGAAAGCTAATATCTCCACCATCTTCATCCACCCCAACCAAAAACCCTTATGTTTCATCAGATATCTCTGGCAGTGAGCTTGTTAGTGGAGTCGTTCCCACCATTGCCCCAAGATGA 2883 41.28 MFDNSGYFCIQSRVWMIEAVLLVWLCWSSSFIGAKATVTDPVEVTALRAIKESLEDPMNNLTNWNRGDPCTSEWTGVLCFNTTMNDSYLHVKELQLLNMHLSGTLSPELGRLSYMQILDFMWNNITGSIPKEIGNITTLELLLLNGNKLTGSLPEELGNLPNLDRIQIDQNQISGSIPRSFANLNKTKHFHMNNNSISGQIPSELSRLPELVHFLLDNNNLSGYLPPEFSEMPKLLIVQLDNNHFNGTFFLPKLQSRSMLMNLSLRNCSLQGEIPNLSKIPYLGYLDLSSNQLNGTIPPGRFSENITTIDLSNNNLTGTIPANFSGLPHLQKLSLENNSLSGTVSSSIWQNRTSNGNETYVVDFQNNDLSNISGTLDLPLNVTVRLYGNPLCTNESLVQFCGSQSEEENDTLNPVNSTVDCTAVRCPLYYEISPASLEICLCAAPLLVGYRLKSPGFSNFLAYQNMFEYYLTSGLSLNLDQLKIDSVEWEKGPRLKMYFKLFPDDVNNSSEFNSSEVLRIRGMFTGWNIPDSDVFGPYELINFTLTDIYKDVIGSSSSSGISTGALVGIILGTIAVAVTLSAIVFLLILKNRLKKYHTISRRRKSTRISIKIDGVKDFTYGEMALATNNFNDSAEVGQGGYGKVYKGILADGTVVAIKRAQEGSLQGQKEFFTEIELLSRVHHRNLVSLIGYCDEEGEQMLVYEFMPNGTLRDHLSAAKSKEPLSFAMRLSIALGSSKGILYLHTEANPPIFHRDVKASNILLDSKFIAKVADFGLSRLAPVPDIEGSTPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMHPISHGKNIVREVNVSYQSGMIFSVIDNRMGSYPSECVEKFVKLALKCCQEDTDARPSMAQVVRELENIWLMMPESDTKTTESLITEPGKLISPPSSSTPTKNPYVSSDISGSELVSGVVPTIAPR* 961
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9054670 9071149 + Vvi6g781 Vvi6g781 788358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g781 960 CDD STKc_IRAK 636 903 - -
Vvi6g781 960 Gene3D Phosphorylase Kinase; domain 1 600 705 - -
Vvi6g781 960 Pfam Protein kinase domain 631 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g781 960 ProSitePatterns Protein kinases ATP-binding region signature. 636 658 IPR017441 GO:0005524
Vvi6g781 960 Pfam Leucine rich repeat 161 221 IPR001611 GO:0005515
Vvi6g781 960 Pfam Leucine rich repeat 282 340 IPR001611 GO:0005515
Vvi6g781 960 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 17 934 - -
Vvi6g781 960 MobiDBLite consensus disorder prediction 918 943 - -
Vvi6g781 960 Gene3D Ribonuclease Inhibitor 301 431 IPR032675 -
Vvi6g781 960 Pfam Leucine rich repeat N-terminal domain 43 79 IPR013210 -
Vvi6g781 960 ProSiteProfiles Protein kinase domain profile. 630 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g781 960 Gene3D Transferase(Phosphotransferase) domain 1 706 918 - -
Vvi6g781 960 SUPERFAMILY L domain-like 53 401 - -
Vvi6g781 960 SUPERFAMILY Protein kinase-like (PK-like) 616 918 IPR011009 -
Vvi6g781 960 ProSitePatterns Serine/Threonine protein kinases active-site signature. 751 763 IPR008271 GO:0004672|GO:0006468
Vvi6g781 960 SMART serkin_6 630 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g781 960 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 934 - -
Vvi6g781 960 Gene3D Ribonuclease Inhibitor 42 300 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g781 Vvi8g40 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76720 PF00069 Pkinase 2.80E-47 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g781 - - vvi:100245012 1842.01