Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g783 ATGTTATACAGTGAGGTGCGAGCTCGCAAGCAGCACCTTGAAGAAAATAAAAAACGGCTTGAAGATTTGGGGATTTTGAAAATTTCACAGAGTTTATCACTTCTCACCAATTCTAACAGCAAGTCTCAGAAGCGTCCCCCAAAGCCTAAGCCGGAGAGCGTTTACATGTTGGAGCCAAGACGCTCTTCACGGGTCCGCAACTCTGTTGCTTCATATTGCGACGAAGTTGACATAAGCCTTCGACCTTTGCGAAAAAGGTCAAAGTTAAATTCATCATGGGCAAGCTATCTTGCAAGGCCATTGAATGAAGTTATAACTGCTTCTTATGAAGAAAGGGTTCATGCTATCAAGGCTGCAGAGGAGATCCAAAGCAATCTACAGTCTGGAAATCCATCTTTTGTCAAATCAATGGTTCGATCTCATGTTTATAGCTGTTTTTGGCTGGGGCTTCCTTCCAAGTTTTGCGAGGACCATCTACCAAAAACGTTATTGGACATGGTATTAGAAGATGAGAATGGTACAGAATATGGGGCCGTCTATATAGGCAAGAGGACTGGGCTTAGTGGTGGTTGGAGAGGATTTGCACTAGATCATAAACTGGATGATGGTGATGCTTTAGTATTTGAATTGATTGAGCCAGCAAGATTCAAGGTTTATATAGTGAGAGCATCAGAAGTTTCAAGTAAAAAAAATGATGCGGATGTAGATGAAGTACATAGTGCTGCTAAAAGGAGATCAAAGCGAGCTACAAGGTTAAATAAATGCAATGAATCTGAACCAAAACAGGATCGAAAATCAACCCAAAAAGTAATTGAAAGTAGTGAGTCAACGGTCCATCAGGGGGGTGGAGTGAAAAATGAAGACGAGTTAGAGGATGTAAATGCGACCGAAGGGCCTAGAAAGAGAATCACCCGTTCAAAGCGTCTGACTAAGAAATTATCTTGA 945 41.69 MLYSEVRARKQHLEENKKRLEDLGILKISQSLSLLTNSNSKSQKRPPKPKPESVYMLEPRRSSRVRNSVASYCDEVDISLRPLRKRSKLNSSWASYLARPLNEVITASYEERVHAIKAAEEIQSNLQSGNPSFVKSMVRSHVYSCFWLGLPSKFCEDHLPKTLLDMVLEDENGTEYGAVYIGKRTGLSGGWRGFALDHKLDDGDALVFELIEPARFKVYIVRASEVSSKKNDADVDEVHSAAKRRSKRATRLNKCNESEPKQDRKSTQKVIESSESTVHQGGGVKNEDELEDVNATEGPRKRITRSKRLTKKLS* 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9077585 9081132 - Vvi6g783 Vvi6g783 788360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g783 314 ProSiteProfiles B3 DNA-binding domain profile. 133 224 IPR003340 GO:0003677
Vvi6g783 314 Gene3D - 108 226 IPR015300 -
Vvi6g783 314 Coils Coil 3 23 - -
Vvi6g783 314 SUPERFAMILY DNA-binding pseudobarrel domain 127 225 IPR015300 -
Vvi6g783 314 CDD B3_DNA 131 222 IPR003340 GO:0003677
Vvi6g783 314 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 8 237 IPR044837 -
Vvi6g783 314 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS05G0481400 8 237 - -
Vvi6g783 314 SMART B3_2 133 224 IPR003340 GO:0003677
Vvi6g783 314 Pfam B3 DNA binding domain 133 223 IPR003340 GO:0003677
Vvi6g783 314 MobiDBLite consensus disorder prediction 282 303 - -
Vvi6g783 314 MobiDBLite consensus disorder prediction 231 314 - -
Vvi6g783 314 MobiDBLite consensus disorder prediction 251 270 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14968 PF02362 B3 2.10E-16 CL0405 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g783 - - vvi:100250145 573.933