Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g786 ATGGAGACGTCTGGTAGCAATTCAAGATACGGAATCCATATCGCTGCTTCCAACTTCATCCAGGCGCCATTGGCGGCGCTTTTGGAGTATTCTGGTATTTTCAGCACCAGGTCTTCTTCTTCTCAGGAAACCGACGGCTTGATTGCTCCTTCACCTGCTTCACTCGATAGCTTCCACTCCCGCTCCGACGATCGCGATCGCGATCACGATCCGTCGACTCCTGCCTCCACTCCTGAGGAGGCTCCCGCCGTTTCGGACGCTAGCAGGAATGAAAGTGGGAGTGGTGTAGCGGCTGTTAATTCTGGCGGGTCAACTGCCGATGGGGAGCCTGCCAATGGGGGCAGTGTTAATAACAGGGATTCTTCTTATCAGAGATACGATATTCAGCAATTTGCCAGATGGATCGAGCAGATTCTTCCATTTTCTTTGCTTTTATTGGTTGTTTTCATCAGACAACATTTGCAAGGTTTCTTTGTTACGATTTGGATTGCTGCAGTCATGTTTAAATCAAATGATATTCTACGAAAGCAGACAGCTCTAAAGGGGGAAAGAAAATTATCTGTTCTCACGGGCATCACTGCAGTGTTTATGCTTCATGTTATCTGTGTTTATTGGTGGTATCGGAATAATGACCTTCTATACCCTCTGGTTTTGCTTCCTCCAAAAGCAATACCTCCATTCTGGCATGCTATTTTCATCATCATGGTGAATGATACAATGGTGCGTCAAGCAGCAATGGCTTTAAAGTGCATACTTTTGATGTATTACAAAAATAGTAGAGGCCGTGATTATCGTAAACAGGGTCAGATGCTAACTCTTGTTGAGTATCTGTTGTTGCTGTACCGTGCCTTGTTGCCTACACCAGTCTGGTATCGGTTCTTTTTGAACAAAGAATATGGAAGCCTCTTTTCTTCATTGACTACAGGGTTGTATTTAACTTTTAAGCTTACATCAGTTGTTGAGAAGGTTCAATCCTTCTTTGCTGCATTGAGGGCCTTATCGCGTAAGGAGGTGCATTATGGGTCTTATGCCACATCTGAACAGGTTAATGCAGCAGGGGATCTCTGTGCTATATGCCAGGAGAAGATGCATGCTCCGATTTTGCTTCGGTGTAAACACATATTTTGTGAAGACTGTGTATCAGAATGGTTTGAGCGAGAGAGGACATGCCCATTGTGCAGGGCCTTGGTTAAACCTGCTGATATCAGATCATATGGTGATGGATCGACTAGTCTGTTTTTCCAGATATTTTAG 1254 44.66 METSGSNSRYGIHIAASNFIQAPLAALLEYSGIFSTRSSSSQETDGLIAPSPASLDSFHSRSDDRDRDHDPSTPASTPEEAPAVSDASRNESGSGVAAVNSGGSTADGEPANGGSVNNRDSSYQRYDIQQFARWIEQILPFSLLLLVVFIRQHLQGFFVTIWIAAVMFKSNDILRKQTALKGERKLSVLTGITAVFMLHVICVYWWYRNNDLLYPLVLLPPKAIPPFWHAIFIIMVNDTMVRQAAMALKCILLMYYKNSRGRDYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLTTGLYLTFKLTSVVEKVQSFFAALRALSRKEVHYGSYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADIRSYGDGSTSLFFQIF* 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9099432 9119148 + Vvi6g786 Vvi6g786 788363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g786 417 MobiDBLite consensus disorder prediction 58 74 - -
Vvi6g786 417 SUPERFAMILY RING/U-box 349 399 - -
Vvi6g786 417 SMART ring_2 356 393 IPR001841 -
Vvi6g786 417 ProSiteProfiles Zinc finger RING-type profile. 356 394 IPR001841 -
Vvi6g786 417 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 3 65 IPR044235 GO:0061630|GO:1904294
Vvi6g786 417 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 88 417 IPR044235 GO:0061630|GO:1904294
Vvi6g786 417 MobiDBLite consensus disorder prediction 87 119 - -
Vvi6g786 417 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 88 417 - -
Vvi6g786 417 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 65 - -
Vvi6g786 417 MobiDBLite consensus disorder prediction 39 119 - -
Vvi6g786 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 331 404 IPR013083 -
Vvi6g786 417 ProSitePatterns Zinc finger RING-type signature. 371 380 IPR017907 -
Vvi6g786 417 CDD RING-HC_RNFT1_like 355 394 - -
Vvi6g786 417 Pfam Zinc finger, C3HC4 type (RING finger) 354 397 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g786 Vvi8g33 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g786 - K22379 vvi:100260395 780.015