Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g808 ATGGGGGTCTCAGGGAAATGGATTAAAGCATTGGTTGGTTTAAAGAAATCAGAAAAGTCGCAGTCTTCAGAGAAGGATGAAAATAGAACAGCAGCAGGTAGCAAGTTTTGGCACAGGAGAAAGCATTCTGTTGAGATTAATACTGATTTACTTCAAGTTGAGTTAGATCAGAATGCTGCTCCACCAGTGGAAGATACTGATCTCAATTCAGTCCCAGATCCTGCTGGTTCCCCTTCTGGTTCAAATCAAGCACAAGATGCAGTTCAAGTTCAGCAAAATGTGAGGGAAGAGTGGGCTGCAACATACATCCAAACAGCTTTTCGAGGATTTTTGGCTAGAAGAGCTCTACGCGCTTTGAAAGGGTTGGTAAGACTTCAAGCCCTCGTTAGGGGCCATGCTGTGCGAAAGCAAGCTGCAATAACTCTACGCTGCATGCAAGCTTTAGTGAGAGTTCAAGCTCGTGTCCGTGCAAGACGTGTTCGCTTGGCATTGGAAAGTCAAACAGCACAACAAAAACTTCAACTGCAACTAGCAAATGAGGCTCGTGTTCGAGAAATTGAGGAAGGGTGGTGCGATAGTGTAGGATCTGTTGAAGATATTCAAGCCAAATTGCTAAAAAGGCAGGAGGCAGCAGCTAAGCGAGAGAGAGCCATGGCCTATGCTCTGGCTCATCAGTGGCAGGCGGGATCAAGGCAGCAGGCTGCTCCCTCTGAGTTTGAACCAGATAAAAGCAACTGGGGTTGGAACTGGTTGGAAAGATGGATGGCTGTTCGTCCATGGGAGAATCGGTTTCTTGACATAAATCTGAGAGATGGAGTGATGATTCGTGAGAATGGTTCAACTGAGGGAAAGAATGGCTCCAAGACCCAGTCAAAATCTGCTGGAAAGAAACCCATTTCTTTAAATCTCTCAAATCAGAAAATGGGTCCATCTAATTCTGATGGGGGTAGTTCTTCTCCCACTAAATCAGCAATGTTTCAAGAGGCATCCAGCACGGTTTCAGCCAAGCCAAAGTCTAAGCCAATTCTTGAAGATCTGGCTGAAGAAGCCAACTCTAGACCTGGTGTTGGGTCTAGATCCCACAGCAATCCAAAAGAGAGATCCACACTACAAGATAAACAGGCAAAGAAGCGGTTGTCTCTGCCCAACAGCGGGATAGGTTCTGGGGCTCAAGCAACCAGGCAGCAAAGTAGAAGTGTGTTAAAAAAAGCAGCAAGTGCACAGAAGCCGATAAAGGATAATTCCAAGGTGAACATAAAGGGGGACTTGGAGACTACAAAATCTACATCGGTCAGTGATCTCTAG 1305 45.9 MGVSGKWIKALVGLKKSEKSQSSEKDENRTAAGSKFWHRRKHSVEINTDLLQVELDQNAAPPVEDTDLNSVPDPAGSPSGSNQAQDAVQVQQNVREEWAATYIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLALESQTAQQKLQLQLANEARVREIEEGWCDSVGSVEDIQAKLLKRQEAAAKRERAMAYALAHQWQAGSRQQAAPSEFEPDKSNWGWNWLERWMAVRPWENRFLDINLRDGVMIRENGSTEGKNGSKTQSKSAGKKPISLNLSNQKMGPSNSDGGSSSPTKSAMFQEASSTVSAKPKSKPILEDLAEEANSRPGVGSRSHSNPKERSTLQDKQAKKRLSLPNSGIGSGAQATRQQSRSVLKKAASAQKPIKDNSKVNIKGDLETTKSTSVSDL* 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10154119 10173882 + Vvi6g808 Vvi6g808 788385

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g808 434 MobiDBLite consensus disorder prediction 61 90 - -
Vvi6g808 434 MobiDBLite consensus disorder prediction 280 337 - -
Vvi6g808 434 SMART iq_5 118 139 IPR000048 GO:0005515
Vvi6g808 434 SMART iq_5 95 117 IPR000048 GO:0005515
Vvi6g808 434 PANTHER IQ-DOMAIN 5-RELATED 2 388 - -
Vvi6g808 434 ProSiteProfiles IQ motif profile. 120 147 IPR000048 GO:0005515
Vvi6g808 434 MobiDBLite consensus disorder prediction 18 38 - -
Vvi6g808 434 Gene3D - 92 144 - -
Vvi6g808 434 MobiDBLite consensus disorder prediction 72 90 - -
Vvi6g808 434 MobiDBLite consensus disorder prediction 14 38 - -
Vvi6g808 434 ProSiteProfiles IQ motif profile. 96 124 IPR000048 GO:0005515
Vvi6g808 434 PANTHER IQ-DOMAIN 5-RELATED 2 388 - -
Vvi6g808 434 MobiDBLite consensus disorder prediction 384 403 - -
Vvi6g808 434 Pfam IQ calmodulin-binding motif 98 117 IPR000048 GO:0005515
Vvi6g808 434 MobiDBLite consensus disorder prediction 277 434 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g808 - - - vvi:100264099 777.704
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g808 Blo03g01027 . . . . . Bma14g00379 Bma07g01423 Cmo10g00895 Cmo11g00931 Cma10g00857 . . . . . Cpe18g00165 . . . . . . . . . . . . . . . Cone5ag1312 Cone18ag0162 Cone11ag1428 Lsi06g00645 . . . . . . Bda09g00275 . Bpe11g00883 . Bma11g00338 . . . Cma11g00912 . . . . . . . . . . . . Cla03g01384 Cam03g1463 Cec03g1500 Cco03g1495 Clacu03g1486 Cmu03g2044 Cre03g1715 . Csa01g03281 Chy02g01601 Cme02g00846
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi13g474 ECH 107 328 IQD Protein Family AT3G09710 56.4 1.8e-59 227.3
Vvi8g606 ECH 1 289 IQD Protein Family AT5G03040 56.6 1.1e-72 271.2
Vvi13g474 ECH 1 299 IQD Protein Family AT5G03040 53.0 2.1e-68 256.9
Vvi13g474 ECH 1 309 IQD Protein Family AT3G52290 59.5 1.5e-79 293.9
Vvi8g606 ECH 6 289 IQD Protein Family AT3G52290 56.4 3.7e-75 279.3
Vvi13g474 ECH 96 310 IQD Protein Family AT2G26410 54.6 1.6e-48 191.0
Vvi6g808 . 1 418 IQD Protein Family AT3G22190 60.9 8.6e-109 391.0
Vvi4g85 . 1 390 IQD Protein Family AT2G26180 60.9 5.5e-116 414.8
Vvi19g140 ECH 1 243 IQD Protein Family AT3G15050 53.5 7.0e-61 231.1
Vvi10g183 ECH 67 264 IQD Protein Family AT3G15050 56.7 3.4e-55 212.2
Vvi15g624 ECH 1 558 IQD Protein Family AT4G00820 55.5 4.2e-129 458.8
Vvi15g624 ECH 1 558 IQD Protein Family AT1G01110 51.0 1.2e-120 430.6
Vvi9g268 ECH 1 373 IQD Protein Family AT3G16490 57.3 5.0e-79 292.0
Vvi11g260 ECH 1 395 IQD Protein Family AT3G16490 51.0 2.1e-69 260.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004215 1 3 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 1 42