Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g816 ATGGATGAAATCGATGTTCCTTCTCATTTTATGTGCCCAATTTCCCTGCAACTCATGAGAGATCCAGTCACGGTTGCAACTGGGATCACATACGATCGAGAGAACATAGAGAGATGGTTGTTTTCATGCAAAAACAACACTTGTCCATTCACAAAACAGGTACTTGTTGACACAGACCTAACTCCAAACCACACCCTTCGAAGATTGATCCAGGCATGGTGCATCATCATCAAACTCCTCAATGATGCCATCAAGTTCCCACAGATGCAGCTCAAATGCCTCCAAAGGCTTAGATCCATTGCATTCGAAAGCGACAGGAACAAAAAGTGTTTGGAAGCTGCAGGTGCATTTACAAGAGCAAGTGATGAGGCGCTGAGCATCCTCTATCAACTCGAAACCTCGGAAGCGGCCCTCAAGAGTCTTGTAAGCAGTAACTACGGATTTATAGAGTCGTTGGTACATGTTCTGAAATGCGGAAACTACCAATCTCGGGCATATGCAGCCATGCTATTGAAGTCCATCTTCCAGGTGGCAGATCCAATCCAATTGATCAATGCTAGCCCTGAATTGTTCACGGAGATAGTCCATGTATTGCGCGATGGGATTTCACAGCAAGCCTCAAAGGCAGCACTGAAGCTTCTTGTGGAGCTTTGTCCATGGGGAAGAAACCGAATCAAGGCAGTGGTAGCCGGTGTATCACATGTCTTGATTGAGCATCTTCTTGACACCTCAGAAAAGAGAACCTGTGAACTAATCCTAGTTGTTTTGGATCAACTATGCAGCTGTGCTGAAGGGCGAGCGGAGCTGTTGAAGCATGGGGCTGGGCTGGCCATAGTTTCCAAGAAAATACTTAGGGTTTCTCAGGTGGGAACTGATAGGGCAGTGAAAATCTTGGCCTCTGTTTCAAAGTTTTCAGCAACTTCTAGGGTTCTTCAAGAGATGTTGCAAGTGGGTGTTGTTTCCAAGTTGTGTTTGGTGCTTCAAGTGGACTCTAGTAAAAAAACCAAAGAGAAAACAAGGGAGATCCTCAACTTGCACTCTAGGGTTTGGAAGAACCCTTCATGTATTCCTGCTCGTTTGTTCTCATCTTATCCATCTTCTTGA 1104 45.29 MDEIDVPSHFMCPISLQLMRDPVTVATGITYDRENIERWLFSCKNNTCPFTKQVLVDTDLTPNHTLRRLIQAWCIIIKLLNDAIKFPQMQLKCLQRLRSIAFESDRNKKCLEAAGAFTRASDEALSILYQLETSEAALKSLVSSNYGFIESLVHVLKCGNYQSRAYAAMLLKSIFQVADPIQLINASPELFTEIVHVLRDGISQQASKAALKLLVELCPWGRNRIKAVVAGVSHVLIEHLLDTSEKRTCELILVVLDQLCSCAEGRAELLKHGAGLAIVSKKILRVSQVGTDRAVKILASVSKFSATSRVLQEMLQVGVVSKLCLVLQVDSSKKTKEKTREILNLHSRVWKNPSCIPARLFSSYPSS* 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10566867 10568112 + Vvi6g816 Vvi6g816 788393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g816 367 PANTHER WDSAM1 PROTEIN 116 366 IPR045185 GO:0061630
Vvi6g816 367 PANTHER WDSAM1 PROTEIN 76 115 IPR045185 GO:0061630
Vvi6g816 367 PANTHER WDSAM1 PROTEIN 1 76 IPR045185 GO:0061630
Vvi6g816 367 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Vvi6g816 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 75 IPR013083 -
Vvi6g816 367 SUPERFAMILY RING/U-box 3 75 - -
Vvi6g816 367 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 76 - -
Vvi6g816 367 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 116 366 - -
Vvi6g816 367 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 76 115 - -
Vvi6g816 367 Pfam U-box domain 6 74 IPR003613 GO:0004842|GO:0016567
Vvi6g816 367 Gene3D - 76 348 IPR011989 -
Vvi6g816 367 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Vvi6g816 367 CDD RING-Ubox_PUB 10 53 IPR045210 -
Vvi6g816 367 SUPERFAMILY ARM repeat 72 343 IPR016024 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g816 Vvi8g234 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g816 - - vvi:100254792 691.804