Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g820 ATGGCAACGTACTTTCATGGGAGTTCAGAAATCCAAGCTGACGGATTGCAGACACTTTATCTCATGAATCCAAACTACATAGGCTACTCTGACACACAGCAACCTTCTGCAGCCAACATGCTCTTCCTCAACGCTACTCCAAACTCGCTCAATCCTACAAACCTACCAAATATGTCACTGCAAAACCAGCACTTTGTTGGGATCCCACTTCCAAACATGGGATCAGCCAATTCTGATGATCAAAACCGCTCCTCACTGCATGCCCAGCCTGAGATGTCATCTCTACAAGGGATAGTCCCTCGTTTTCACTACAATTTATGGGGCTCAACTGATCAAAATCCCACCGGAAACCAGCCCCAGATTCCAACAGCGGTGGCGGCCGCCAGTTCTGGCGCATCTGCAGTTTCGAATGGAATTTCTGGTATGCAAAGCGTTCTTTTGGGGTCCAAGTACTTGAAGGCTGCACAGCAGCTTCTGGATGAGGTCGCTAACGTTGGGAAGGGAATCAAGACTGATTCCGGCGAAGAAACTAAAGAGAGGGAGAAGGTGAACACTATCTCAGTGGCTGCATCGACCGGAGAAGCCCTGAGTGGAGGCGAAAGTAGTGCCAAACGTGGAGCTGAGCTATCCACAGCACAAAGGCAGGAGCTTCAGATGAAGAAAGCCAAGCTTGTCAACATGCTTGATGAGGTGGAGCAAAGGTACAGGCAGTACCACCAACAAATGCAAATTGTAGTTTCTTCATTTGAGCAAGCAGCTGGGCAGGGATCAGCAAAATCATACACTGCCTTGGCTTTACAGACCATCTCAAAGCAGTTCAGGTGTCTAAAAGACGCCATTTCTGCACAAATCAAAGCCACAAGCAGCAGCTTAGGTGAAGAAGACTGCTCAGGAGGGAAGGTGGAAGGTTCTAGACTAAGGTTTGTGGATCATCAGCTTCGGCAACAGCGTGCCTTGCAACAGTTGGGAATGATCCAGCACAATGCTTGGAGACCACAGAGAGGACTTCCTGAGAGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCCCTATCCTAAGGATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTACTCGAAGCCAGGTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAAGCCAATGGTTGAAGAAATGTACTTGGAGGAAATAAAGGATCAGGAGCACAATGAAAAATCGACCACCCAGAATGCTTCTCCTGCTGAGCTTTCAAATTCCACAATGTCGACATCCCCCATGGGAGGCTCACTTCAAGTCCAAGCTGGCTTCAATCTCATAGGGTCATCTGAGATTGAAGGTATGGTTCAAAGAAGTCCAAAAAAACCAAGAAGCTATGACATTCAGAGTTCACCCAGTAGCATTCTCTCAATGGACATGGAAATGAAACCCGCTATAAATAATGGTGGTGGATTTGGCGCATACTCCCCCATTGGAGACATAGGAAGGTTTAACCCTGAGCAGTTGGCACCCAGATTTCATGGAAATAGTGTTTCCCTCACTCTTGGTCTTCCCCACTGTGAAAACCTCTCTCTACTTGAAATGGGAAACGGTGAACCGGACTACTGTGGGATCAATGCTGCACAACCTTCTCATTCCAACGCTGCTTACGACAGCATCAACATTCAAAACAGAAAGAGGTTTGCTGCTCAGTTGCTACCAGATTTTGTGGCCTGA 1722 47.74 MATYFHGSSEIQADGLQTLYLMNPNYIGYSDTQQPSAANMLFLNATPNSLNPTNLPNMSLQNQHFVGIPLPNMGSANSDDQNRSSLHAQPEMSSLQGIVPRFHYNLWGSTDQNPTGNQPQIPTAVAAASSGASAVSNGISGMQSVLLGSKYLKAAQQLLDEVANVGKGIKTDSGEETKEREKVNTISVAASTGEALSGGESSAKRGAELSTAQRQELQMKKAKLVNMLDEVEQRYRQYHQQMQIVVSSFEQAAGQGSAKSYTALALQTISKQFRCLKDAISAQIKATSSSLGEEDCSGGKVEGSRLRFVDHQLRQQRALQQLGMIQHNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKDQEHNEKSTTQNASPAELSNSTMSTSPMGGSLQVQAGFNLIGSSEIEGMVQRSPKKPRSYDIQSSPSSILSMDMEMKPAINNGGGFGAYSPIGDIGRFNPEQLAPRFHGNSVSLTLGLPHCENLSLLEMGNGEPDYCGINAAQPSHSNAAYDSINIQNRKRFAAQLLPDFVA* 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10835006 10839521 - Vvi6g820 Vvi6g820 788397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g820 573 MobiDBLite consensus disorder prediction 402 430 - -
Vvi6g820 573 CDD homeodomain 330 391 IPR001356 GO:0003677
Vvi6g820 573 MobiDBLite consensus disorder prediction 409 430 - -
Vvi6g820 573 ProSiteProfiles 'Homeobox' domain profile. 327 390 IPR001356 GO:0003677
Vvi6g820 573 Pfam Homeobox KN domain 347 386 IPR008422 GO:0003677|GO:0006355
Vvi6g820 573 SUPERFAMILY Homeodomain-like 331 396 IPR009057 -
Vvi6g820 573 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 127 413 - -
Vvi6g820 573 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 122 - -
Vvi6g820 573 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 409 542 - -
Vvi6g820 573 Coils Coil 214 241 - -
Vvi6g820 573 Gene3D - 326 404 - -
Vvi6g820 573 SMART HOX_1 330 394 IPR001356 GO:0003677
Vvi6g820 573 SMART prehox3 140 282 IPR006563 -
Vvi6g820 573 Pfam Associated with HOX 145 281 IPR006563 -
Vvi6g820 573 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 409 542 - -
Vvi6g820 573 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 127 413 - -
Vvi6g820 573 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 6 122 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14970 PF07526 POX 8.20E-49 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g820 - - vvi:100259827 815.839