Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g841 ATGTCACTGGACATCACCCCCGAACGTGTATGTTATGTCCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCACCAGTCTGTTCACCATTGTGACAGTCAGATGCGGGCATTGTGCTAATTTGTTGTCTGTTAACATGGGAGCTTTGCTCCAAACAGTTCCTACTCAGGATCTCCAGTCACAGAAACAACAGCTAAGCTGTGGAGATCCAAGTGAGGATTGTGGATCATCTTCCAAATGCAACAAATTTTCTGCATTTGAGTCTGCAGAGCATGAACAGCCAAGAATGCCTCCAATACGTCCCCCAGAGAAAAGACAACGAGTTCCTTCTGCATATAACAGGTTTATTAAGGAGGAAATCCAAAGGATAAAAGCTAGTAATCCAGATATTACCCACAGGGAAGCTTTTAGCACAGCAGCCAAAAATTGGGCACATTTTCCTCATATTCACTTTGGGCTAAAGCTGGATGGCAACAAGCAGGGAAAGTTGGATCAGGCATTTGCAGGGGAAGGGCCACACAAGGCTCATGGATTCTATTAA 552 44.75 MSLDITPERVCYVHCNFCNTILAVSVPCTSLFTIVTVRCGHCANLLSVNMGALLQTVPTQDLQSQKQQLSCGDPSEDCGSSSKCNKFSAFESAEHEQPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDITHREAFSTAAKNWAHFPHIHFGLKLDGNKQGKLDQAFAGEGPHKAHGFY* 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11951269 11958015 + Vvi6g841 Vvi6g841 788418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g841 183 Pfam YABBY protein 6 157 IPR006780 GO:0007275
Vvi6g841 183 Gene3D High mobility group box domain 93 152 IPR036910 -
Vvi6g841 183 PANTHER PROTEIN YABBY 6-RELATED 1 183 IPR006780 GO:0007275
Vvi6g841 183 PANTHER AXIAL REGULATOR YABBY 2-RELATED 1 183 - -
Vvi6g841 183 SUPERFAMILY HMG-box 101 150 IPR036910 -
Vvi6g841 183 MobiDBLite consensus disorder prediction 91 106 - -
Vvi6g841 183 MobiDBLite consensus disorder prediction 91 112 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g841 Vvi8g217 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14971 PF04690 YABBY 8.90E-74 CL0114 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g841 K25796 - vvi:100256505 387.111