Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g878 ATGATGATGTTTGATGAAATGGGAATTTGCGGTAATCTTGAGTTTATGTCCGTTCCTTTCATGGAAGGAGACATGGCTGCCTCTCAGCCTGAACAGGTGGCCCCTGTGGATGATGAATATACTGATGAAGAGATGGATGTGGATGAGCTACAGAGGAGGATGTGGAGAGATAAATTACGCCTCAAGCGGCTTAAGGAACAGAAAGAGGATCAGAATGGAGCTGATACTGTTAAGCAGCGGCAGTCTCAGGAGCAGGCAAGGAGGAAGAAAATGGCTTTGTATATGGTATTATTCCAGAGAAGGGAAAGGAAACAAGAAGGCTGTAATTCAGTTGGTCCTACTTCACACACCTTGCATGAGCTTCAAGACACAACCCTTGGTTCACTCTTATCTGCACTCATGCAGCATTGTGAACCCCCACAGAGGCGGTTTCCATTAGAGAAGGGTATCCCACCGCCATGGTGGCCTACTGGGAATGAGGAATGGTGGCCCCAGCTGGGTTCACCAAAAGATCAGGGTCCTCCTCCTTACAAAAAGCCTCATGATTTGAAGAAGGCATGGAAGGTGAGTGTTCTGACTGCAGTTATGAAGCATATGTCACCTGATATTTCAAAAATTCGCAAGCTTGTGAGGCAGTCCAAGTGCTTGCAAGACAAGATGACGGCCAAGGAGAGTGCCACATGGCTTGCTATCATCAACCAGGAGGAGGCCTTAGCCAGAAAGCTTTACCCTGATTACCGCCCCCCTTTGTCCTCTGCTAGTGGGAGTGGGTCTTTTTCCATCAAGGATTGCGGCGAGTACGATGTTGAAGGGGTTCAGGATGAACTGAGTTTTGAGATTCAGGAATGCAAACCTGATAGCAGCAATTTTTCCAATTTGAATTTGTCACCAACTTGGATTTCCTTCACAAGAGAAAACTTTAGTTTCAACTATCTTATATTTTGTTATTTGAAAAAGGGAAAAAAAAATAAAGGTATTGATTTTGTATCTATGAAAATCTTAATCTCCACTCTTGAAAGTACATAG 1026 44.44 MMMFDEMGICGNLEFMSVPFMEGDMAASQPEQVAPVDDEYTDEEMDVDELQRRMWRDKLRLKRLKEQKEDQNGADTVKQRQSQEQARRKKMALYMVLFQRRERKQEGCNSVGPTSHTLHELQDTTLGSLLSALMQHCEPPQRRFPLEKGIPPPWWPTGNEEWWPQLGSPKDQGPPPYKKPHDLKKAWKVSVLTAVMKHMSPDISKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARKLYPDYRPPLSSASGSGSFSIKDCGEYDVEGVQDELSFEIQECKPDSSNFSNLNLSPTWISFTRENFSFNYLIFCYLKKGKKNKGIDFVSMKILISTLEST* 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13080725 13085918 + Vvi6g878 Vvi6g878 788455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g878 341 Gene3D - 113 246 IPR023278 GO:0003700|GO:0005634
Vvi6g878 341 Coils Coil 47 67 - -
Vvi6g878 341 SUPERFAMILY DNA-binding domain of EIN3-like 115 239 IPR023278 GO:0003700|GO:0005634
Vvi6g878 341 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 1 92 - -
Vvi6g878 341 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 104 298 - -
Vvi6g878 341 Pfam Ethylene insensitive 3 111 236 IPR006957 GO:0005634
Vvi6g878 341 MobiDBLite consensus disorder prediction 66 86 - -
Vvi6g878 341 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 1 92 IPR006957 GO:0005634
Vvi6g878 341 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 104 298 IPR006957 GO:0005634
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14972 PF04873 EIN3 3.70E-68 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g878 K14514 - vvi:100256432 485.337