Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g878 ATGATGATGTTTGATGAAATGGGAATTTGCGGTAATCTTGAGTTTATGTCCGTTCCTTTCATGGAAGGAGACATGGCTGCCTCTCAGCCTGAACAGGTGGCCCCTGTGGATGATGAATATACTGATGAAGAGATGGATGTGGATGAGCTACAGAGGAGGATGTGGAGAGATAAATTACGCCTCAAGCGGCTTAAGGAACAGAAAGAGGATCAGAATGGAGCTGATACTGTTAAGCAGCGGCAGTCTCAGGAGCAGGCAAGGAGGAAGAAAATGGCTTTGTATATGGTATTATTCCAGAGAAGGGAAAGGAAACAAGAAGGCTGTAATTCAGTTGGTCCTACTTCACACACCTTGCATGAGCTTCAAGACACAACCCTTGGTTCACTCTTATCTGCACTCATGCAGCATTGTGAACCCCCACAGAGGCGGTTTCCATTAGAGAAGGGTATCCCACCGCCATGGTGGCCTACTGGGAATGAGGAATGGTGGCCCCAGCTGGGTTCACCAAAAGATCAGGGTCCTCCTCCTTACAAAAAGCCTCATGATTTGAAGAAGGCATGGAAGGTGAGTGTTCTGACTGCAGTTATGAAGCATATGTCACCTGATATTTCAAAAATTCGCAAGCTTGTGAGGCAGTCCAAGTGCTTGCAAGACAAGATGACGGCCAAGGAGAGTGCCACATGGCTTGCTATCATCAACCAGGAGGAGGCCTTAGCCAGAAAGCTTTACCCTGATTACCGCCCCCCTTTGTCCTCTGCTAGTGGGAGTGGGTCTTTTTCCATCAAGGATTGCGGCGAGTACGATGTTGAAGGGGTTCAGGATGAACTGAGTTTTGAGATTCAGGAATGCAAACCTGATAGCAGCAATTTTTCCAATTTGAATTTGTCACCAACTTGGATTTCCTTCACAAGAGAAAACTTTAGTTTCAACTATCTTATATTTTGTTATTTGAAAAAGGGAAAAAAAAATAAAGGTATTGATTTTGTATCTATGAAAATCTTAATCTCCACTCTTGAAAGTACATAG 1026 44.44 MMMFDEMGICGNLEFMSVPFMEGDMAASQPEQVAPVDDEYTDEEMDVDELQRRMWRDKLRLKRLKEQKEDQNGADTVKQRQSQEQARRKKMALYMVLFQRRERKQEGCNSVGPTSHTLHELQDTTLGSLLSALMQHCEPPQRRFPLEKGIPPPWWPTGNEEWWPQLGSPKDQGPPPYKKPHDLKKAWKVSVLTAVMKHMSPDISKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARKLYPDYRPPLSSASGSGSFSIKDCGEYDVEGVQDELSFEIQECKPDSSNFSNLNLSPTWISFTRENFSFNYLIFCYLKKGKKNKGIDFVSMKILISTLEST* 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13080725 13085918 + Vvi6g878 Vvi6g878 788455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g878 341 Gene3D - 113 246 IPR023278 GO:0003700|GO:0005634
Vvi6g878 341 Coils Coil 47 67 - -
Vvi6g878 341 SUPERFAMILY DNA-binding domain of EIN3-like 115 239 IPR023278 GO:0003700|GO:0005634
Vvi6g878 341 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 1 92 - -
Vvi6g878 341 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 104 298 - -
Vvi6g878 341 Pfam Ethylene insensitive 3 111 236 IPR006957 GO:0005634
Vvi6g878 341 MobiDBLite consensus disorder prediction 66 86 - -
Vvi6g878 341 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 1 92 IPR006957 GO:0005634
Vvi6g878 341 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 104 298 IPR006957 GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g878 K14514 EIN3; ethylene-insensitive protein 3 - vvi:100256432 485.337
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g878 . . . . . . . . . Cmo11g00819 . . . . . . Cpe18g00129 . . . . . . . . . . . . . . . . Cone11ag0985 Cone18ag0594 Lsi06g00444 . . . . . . . . . . . . . . Cma11g00814 . . . . Cpe04g00955 . . . . . . . Cla03g01353 Cam03g1432 Cec03g1468 Cco03g1460 Clacu03g1455 Cmu03g2014 Cre03g1685 . . . Cme02g00432
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi6g878 . 1 286 EIL Transcription Factor Family AT2G27050 59.5 9.4e-98 354.8
Vvi6g153 . 49 290 EIL Transcription Factor Family AT2G27050 69.0 1.8e-93 340.5
Vvi6g153 . 50 309 EIL Transcription Factor Family AT5G21120 51.1 1.3e-71 267.7
Vvi6g153 . 49 562 EIL Transcription Factor Family AT1G73730 52.9 2.6e-137 486.1
Vvi6g878 . 2 290 EIL Transcription Factor Family AT3G20770 58.2 2.3e-102 370.2
Vvi6g153 . 49 290 EIL Transcription Factor Family AT3G20770 69.7 3.3e-96 349.7
Vvi6g153 . 81 286 EIL Transcription Factor Family AT5G65100 60.5 1.7e-72 270.8
Vvi6g878 . 110 242 EIL Transcription Factor Family AT5G65100 68.4 1.1e-50 198.4
Vvi6g153 . 75 288 EIL Transcription Factor Family AT5G10120 59.4 1.4e-72 270.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14972 PF04873 EIN3 3.70E-68 No_clan Vvi TF