Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g897 ATGGAACTTCTGCACTCACACAGAGTGGAGGTATTGAGCATAGCCGTTGCTCTTGCAGCCATTGGCGCCGGAACCGCCTATTATTTCTATTTCATCAAAAAACCTAAAGGTTGCTTGGATCCTGAAAACTTCAAGGAGTTCAAACTTATAAAACGCACCCAGCTCAGCCATAATGTGGCTAAATTTATATTTGCTCTTCCAACACCAACTTCAGTGTTGGGACTTCCAATTGGACAACATATGAGTTGCAAGGGAAAGGATAGTCTTGGTGAAGATGTTGTTAAACCATATACTCCAACCACTTTAGATTCAGATCTTGGATACTTTGAACTCGTTATAAAGATGTATCCACAAGGAAGGATGTCCCATCATTTTCGGGAGATGTGTGAAGGTGATTACCTGGCTGTGAAGGGACCTAAGGGGCGCTTCAAGTATCAGCCTGGCCAAGTTATAGCTTTTGGGATGCTTGCTGGAGGCACTGGCATCACTCCAATGTTCCAGGTCACTAGAGCCATATTAGAAAACCCAAGTGACAATACCAAGGTGCATCTTATTTATGCCAATGTCACATATGAGGACATTCTTTTAAAGGAAGAGCTGGATAATTTTGCTGCTAACTTTCCAAACCGCTTCACTGTCTATTATGTTCTGAATCAGCCACCTGAAGGATGGAATGGTGGTGTTGGGTTCGTGTCAAAGGAAATGATTCAAACCCACTGCCCACCTCCAGCAACCAATATTCAGATATTGAGGTGCGGGCCACCGCCCATGAACAAGGCCATGGCAGGTCACCTTGAGGCTCTTGGATACACTTCCCAAATGCAGTTCAAGTTCTGA 837 44.32 MELLHSHRVEVLSIAVALAAIGAGTAYYFYFIKKPKGCLDPENFKEFKLIKRTQLSHNVAKFIFALPTPTSVLGLPIGQHMSCKGKDSLGEDVVKPYTPTTLDSDLGYFELVIKMYPQGRMSHHFREMCEGDYLAVKGPKGRFKYQPGQVIAFGMLAGGTGITPMFQVTRAILENPSDNTKVHLIYANVTYEDILLKEELDNFAANFPNRFTVYYVLNQPPEGWNGGVGFVSKEMIQTHCPPPATNIQILRCGPPPMNKAMAGHLEALGYTSQMQFKF* 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13684773 13698955 + Vvi6g897 Vvi6g897 788474

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g897 278 CDD cyt_b5_reduct_like 47 278 - -
Vvi6g897 278 Gene3D Translation factors 37 136 - -
Vvi6g897 278 PANTHER NADH-CYTOCHROME B5 REDUCTASE 1 278 - -
Vvi6g897 278 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 134 272 IPR039261 -
Vvi6g897 278 SUPERFAMILY Riboflavin synthase domain-like 38 147 IPR017938 -
Vvi6g897 278 Pfam Oxidoreductase NAD-binding domain 155 261 IPR001433 GO:0016491
Vvi6g897 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 154 173 IPR001709 GO:0016491
Vvi6g897 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 192 203 IPR001709 GO:0016491
Vvi6g897 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 248 256 IPR001709 GO:0016491
Vvi6g897 278 PANTHER NADH-CYTOCHROME B5 REDUCTASE 1 278 IPR001834 GO:0016491
Vvi6g897 278 Pfam Oxidoreductase FAD-binding domain 47 145 IPR008333 -
Vvi6g897 278 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 42 146 IPR017927 GO:0016491
Vvi6g897 278 Gene3D - 137 278 IPR039261 -
Vvi6g897 278 PRINTS Cytochrome B5 reductase signature 73 84 - -
Vvi6g897 278 PRINTS Cytochrome B5 reductase signature 95 102 - -
Vvi6g897 278 PRINTS Cytochrome B5 reductase signature 131 145 - -
Vvi6g897 278 PRINTS Cytochrome B5 reductase signature 154 173 - -
Vvi6g897 278 PRINTS Cytochrome B5 reductase signature 192 203 - -
Vvi6g897 278 PRINTS Cytochrome B5 reductase signature 248 256 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g897 K00326 CYB5R; cytochrome-b5 reductase [EC:1.6.2.2] - vvi:100247986 561.992
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi6g897 Vvi8g84 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g897 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g1022 . . . . . . Cpe16g00938 . Bhi10g00465 Tan07g0597 Cmetu05g0368 . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi16g991 . 1 135 NADPH P450 reductases AT5G53560 80.0 1.2e-59 226.1
Vvi7g751 . 5 132 NADPH P450 reductases AT5G53560 64.8 3.9e-47 184.5
Vvi7g751 . 2 132 NADPH P450 reductases AT5G48810 69.9 2.5e-52 201.8
Vvi16g991 . 1 134 NADPH P450 reductases AT5G48810 60.3 8.5e-45 176.8
Vvi7g751 . 21 134 NADPH P450 reductases AT2G32720 78.9 6.0e-48 187.2
Vvi16g991 . 22 133 NADPH P450 reductases AT2G32720 65.2 3.9e-39 157.9
Vvi1g19 . 1 133 NADPH P450 reductases AT1G26340 70.1 2.1e-48 188.7
Vvi8g84 ECH 2 278 NADPH P450 reductases AT5G17770 81.0 5.0e-129 457.6
Vvi6g897 ECH 8 279 NADPH P450 reductases AT5G17770 77.2 8.2e-124 440.3
Vvi13g922 . 24 290 NADPH P450 reductases AT5G17770 68.5 1.8e-110 396.0
Vvi16g991 . 1 135 NADPH P450 reductases AT5G53560 80.0 1.2e-59 226.1
Vvi7g751 . 5 132 NADPH P450 reductases AT5G53560 64.8 3.9e-47 184.5
Vvi7g751 . 2 132 NADPH P450 reductases AT5G48810 69.9 2.5e-52 201.8
Vvi16g991 . 1 134 NADPH P450 reductases AT5G48810 60.3 8.5e-45 176.8
Vvi7g751 . 21 134 NADPH P450 reductases AT2G32720 78.9 6.0e-48 187.2
Vvi16g991 . 22 133 NADPH P450 reductases AT2G32720 65.2 3.9e-39 157.9
Vvi1g19 . 1 133 NADPH P450 reductases AT1G26340 70.1 2.1e-48 188.7
Vvi8g84 ECH 2 278 NADPH P450 reductases AT5G17770 81.0 5.0e-129 457.6
Vvi6g897 ECH 8 279 NADPH P450 reductases AT5G17770 77.2 8.2e-124 440.3
Vvi13g922 . 24 290 NADPH P450 reductases AT5G17770 68.5 1.8e-110 396.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86