Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g9 ATGGCTACACCTGAATCAGTCATAGACCTGGAGGGCAAGGATCTCGAAGGAGGTCGCCTGGATTGCGACGACTACGTCTTCGTTAAGATCGGTGAATCCGTCACTATAAAGCCCCAATATTACAACTTCAATCTCGATAGCCCCCTTCCTTCTCAGCCCTTAGCCGTCTCCGAGCGTTCTCAACTCATCTTCGTTGCCCATTCTGACGGGTTTTGTGTGGCCAGGACCGAGGCTGTTATTGAGTTGGCCAAGGAGATTAAGGAGAAAGGAAGCGGTTCTTCTATACAAGAGTTGAGTGTGGTGGACGTTCCTATTGCTAATGTTCGCATTCTGGCACTATCTACTGACTCCTCTACGCTTGCCGCTTCCGTTGGCGGTGATATTCATTTCTTCTCTGTTGATTCCCTTCTCAATAAGGGACAAGAGCCATCTTTCACCCGTTCACTCAGTGGATCAAGCAGTGTTAAGGACATGCGGTGGAGGAAAAAAATGGATAACTCTTATGTTGTTCTTTCAAGTGATGGAAAGCTATACCATGGAGCTGCTGAAGGCCCCCTTAAAGATGTAATGGACGGTGTTGATGCTGTTGAATGGAGTGTAAAAGGAAACTCCATTGCTGTGGCGAGAAAGAATACTCTTAGCTTACTGTCATCAAAATTCAAGGAAAGGCTGTGCATGTCTCTATCATTCAAGTCATGGATTGGGGATTCTGGTGTAAATTGCACTGTAAAAGTGGATTCTATCAGGTGGGTTCGTCCTGACTGCATCATTCTCGGGTGCTTTAAGCTAACTGCTGACGGAAAGGAGGAAAGTTTCATGGTCCAAGTGGTCACAAGCAAAGAAGGAAAGATCACTGATGCTTCTTCCCTGCCCACTGTGCTATCCTTCTATGATGTATTTCCAGGTTTGGTGGATGATATTGTACCTTTTGGAAGTGGCCCTTATCTATTCTTGAGCTATTTAGAACAATGTCAACTTGCAATTACTACTAGCAGGAAGAATGTGGATAACCACATTGTTTTATTCGGTTGGTCACTTGATGATAAGAAGAATGAAGCTGCAATTTTGGATATTGGTCGAGATAAATATCGCCCAAGGATTGAACTTCAAGAGAATGATGATGACAATTTGATCTTGGGGCTTTGTTGTGACAAAGTTTCCCTGTATGGGAAAGTTGAAATCCAGCTTGGAGCTGAGGAACCAAGAGAACTTTCACCATATTGTGTACTTTTTTGTCTTACCCTTGAGGGAAAGCTGGTTATGTTCCAGGTTGCCAGTGTAACCGGAACTCCAGCTCCTACTCAGGATCTGTCTCCCCTTACTGGTGATGAAGATGAGACTCCTGCAGAGGCACCTGTGGAACATGATCAGTCACGGGAAGCAAACACGAAGGAAATTAGTATAAAACAAGAGGGGGAGATTCTTATTAAAAATGACCTAAATACTTTTCAGGAAAACAAGTCTTTAATATCGGCCTGCATTGCTGATCAAATATTGCATAAGGAAACTATTGCTGCAGACCATGAAGCAAAATCTCTGGTAAATTCACAGACATTTGAAGCTGATGGGCAACAAAGAGTTTCTACCATAAAGCTGTACCAAGAAGTAGATGGTAAGCAATCAGGACTTCCTAGACAGCAAAGCACTAATTTAGAGGGGTCATCTTTGAAAACTTCTCCTCTAGAGGGGCTTGGTAATGTTGTTGGAGATGTCAAGAAGACGGATATTCAAAAAATTACAGGAGTTGGATCTGGCTTGGGTTCTTCCCAGTCAAGTCATAATTTTTCACGAAGTTTTGAGACTCATAAAGAACTACCAGGGAAGATTGGTTCAACTAACTTACAAAATGCTTCTCAATCATGGTCTGGTGGAAAATTCACTTTTCCCAAATCTACTGAAGAAAAACTATCTTTGTCTTCAAGTTTTGTTGAAAGCGGCAGATCTGAAACTGCTGGGATTAATCTGAGTATTCCACAAGTTCCTGGAGGTCCTGTTGGGAGTCCTATCTACCCAAAAGATGCTGCTACCTCATTGGCTGCTGGCAATTTTGGTAGAATATCTCAGAGCAGAGGACAGAGAGGTTCAATGGTGGCAGGGAATGTTGAACCAATATCTTCGACTCTAGGTTCACAATTGTCAATGCAGGAAAATTTTCCAGCCAAGTCTCCTAATTATAAGTCTTATCCTCCCAAGGAGAATTACAGAACTCCCCCCTTACAAGGACAACTGAACTCCGAACCGAACTTATCAAAACAATTTGGCAATGTTAAAGAGATGGCTAAAGAACTGGATACACTTTTGCAATGTATAGAAGGGCCAGGTGGTTTCAGGGATGCTTGCACCATATTCCAGAAGAGTTCAGTTATGGAATTAGAGCAAGGCATAGGCACCCTTTCTGAAAACTGCCGAATGTGGCGGAGCATAATTGATCAACAGCACGGGGAGATTCATCATCTGCTTGACAAGACAGTGCAAGTTTTGGCAAGGAAAGTATACATGCAAGGCATTGTTAAGCAAGCCACTGATAGCAGATATTGGGACCTCTGGAGTCGGCAGAAGTTGGCTTCTGAGCTAGAACTGAAGCGACGAAATATATTAAAAATAAACCAGGATCTGACAAATCAGCTGATTGAATTAGAGAGGCATTTCAATGCCATTGAGCTTAATAAATTTGGTGAAAATGGTGGCAATCATGTGGGTCGGAGAGCTCTTCAAAGTAGATCTGGTCCTTCAAGACACATGCAGTCCCTGCATAGTTTACATAACACAATGAATTCACAATTAGCAGCTGCAGAGCAACTTTCTGAATGTCTCTCAAAACAGATGACTATGCTGAGCATTGATTCTACTGTGAAAAAGCAGAATGTAAAAAAAGAGTTGTTTGAAGCAATTGGGATTCCATATGATAGTGCCTCTGTCAGCTCTCCGACTATATCAAACACTAGTGATACCCCATCAATGAAGAATTTCCTAGTTTCTTCAAGTTCTGCAAATAAAGATCAGTCTAGGAGAAACCAATTAAGTGCTTTAAAGAGTTATGAACCAGAAACGGTTAGGAGGCGGAGAGACTCACTGGGCCAGAGTTGGGCAAATTTTGAGCCTCCAAAAACAATTGTGAAAAGGATGGTTTTGGAAGAACAGCAGAAGGTGGGTGTTAACAAACCATCCTTCTCTGTGGATAAGCGACAATTTAGTCCTCATAAGCTGGAGGGATCAGCCTTTGCTTACTCAAACAATAATACAACTCCTTCAGCCTTCTTGTATCCATCTAGAAACAAAGGAATTCATGAGATATCTGCAAAACAGGCATCTTATAGCCCATCAACGTCTTTGTTCAGATGGGCCAATGACCCTTCAGGACCATCACAATCTTTTGGGTCTAGATCTCCTACACCTCATGCATTACCAGGAAACAACCTTTCAGCATTCTCATCGCTGTCAGCACCTCAGTCATCACCTGTTGTAGATCAAAGTAATGCAATGGAAACTTGCAATTTGACTAATGAGAGATCAAGCAGTGGGGTGACCTTTGTTGAGAAGTCTGATGCAGTTTCAATCAATGAAACAAAATCTACTCTGCTGTCTGAAAGTCACCTGCCTCAAACACCTATAATCTCCACTAGTTTACCAGCACGGACGCTGCCATTAACTAAGAAACCAAATGAGATGTCAAATTCAAATGGTAAAGGAACTGTGCTTGCAAAGCCAACTATTGGAAGTGTGAAACAGAAACCTGTGTCTCCTGGAAGCTCATTTTCTCAGTCTGGAGTCTCTCCATTCTCTCCCATATCTGCTGTCCAGCCAGCACCTAGCTTGCCTGGAAAAGTTTTCCAGTTGGATATTGCAAAAAGCAAAGGCCAGTCTTGTGAAGAAGTGCCACCTTCTCCTGCACTCTCAAGTCCATTTTTGGTTCCATCATCATCTTCAGTGATAGAGTCCTCAGCAGTTTCCCAATCTTCGTTACCCATGCCATCCACTGTACCAACCTCATCAGCTGCTGTATCCTTCTCTTCTCAGGCCCAAGAAACACTGGTTCCATCTCCATCCACCTCCTTAAATTTAACTTCAGCTTCTCTTCAAACATCACTTCAATCTCCTTTGGGGAAATTTAGTTCAAAATCAGATGTGAATTCTGCTTCACAAGTTCCACCTCAGCAATCCAAGACTCCCACAAGAGAGTTTAGTTTGAAGCTTGAACCTTCAGTGCCATCTGCATCAAAAATTGAATCTTCCACTGGATTGGCATCTGGAAATCTGCCCAGTTTCAACAGTTTAGCAAGTCATGCATCCAATGTGACAACAATGAATGCCAAACCAGAACAGTTGCCTGCTGATGGTGCGTTACAAGCACACCCCTTGATTTCTGGAAGTGCTGCTGGCAGTAAGAATGAGAGTCTGGATGTTACAGTAACCCAGGAGGATGAGATGGAGGAGGAAGCACCCGAGACAAGTCAAGCAACTGAACTTAGAACAAATCCTGCAAGCACTCCATTTACAATGACGGTTCCTAGTGGGGAGCTGTTCCGCCCCGCATCCTTCAACTTCCAGTCGCCACAGCCTTCTCAACCACCTCAGTCAACAAATTTGGGAGCATTCTCTGGAGGCATTAATGCTGGGATCACTGCACAAGCTCCTGCGAGAAGTGGGTTTGGCCAGCTTGCACAGATTGGAGCTGGACAGCAAGCACTGGGATCAGTTCTTGGTGCTTTTGGGCAATCAAGACAGTTTGGTGCTGGTCTACCAGGTGCAGGTTTTGCTTCTGCCAGTAGTTTCACTGGTGGGTTTGCTGGAGGCCACTCTGCTGGTGGTTTTTCAAATGCTGCTGCTGGAGGTGGATTTGCTGGTGTTTCATCTACTGGTGGTGGGTTTGCTGGTCTGGCTTCTGCAGGTGGTGGATTTTCTGGGGCTGCCCCAACCAGTGGGGGTTTTGCTGGAGCCACAGGTGGCGGATTTGGGGCTTTTAGCAACCCACAAGGAAGTGGTGGCTTCGCCTCATTTGGTAGCACAGGAGGAACTGGGAAACCCCCATCTGAGCTCTTCACGCAGATGAGAAAATAG 5058 44.11 MATPESVIDLEGKDLEGGRLDCDDYVFVKIGESVTIKPQYYNFNLDSPLPSQPLAVSERSQLIFVAHSDGFCVARTEAVIELAKEIKEKGSGSSIQELSVVDVPIANVRILALSTDSSTLAASVGGDIHFFSVDSLLNKGQEPSFTRSLSGSSSVKDMRWRKKMDNSYVVLSSDGKLYHGAAEGPLKDVMDGVDAVEWSVKGNSIAVARKNTLSLLSSKFKERLCMSLSFKSWIGDSGVNCTVKVDSIRWVRPDCIILGCFKLTADGKEESFMVQVVTSKEGKITDASSLPTVLSFYDVFPGLVDDIVPFGSGPYLFLSYLEQCQLAITTSRKNVDNHIVLFGWSLDDKKNEAAILDIGRDKYRPRIELQENDDDNLILGLCCDKVSLYGKVEIQLGAEEPRELSPYCVLFCLTLEGKLVMFQVASVTGTPAPTQDLSPLTGDEDETPAEAPVEHDQSREANTKEISIKQEGEILIKNDLNTFQENKSLISACIADQILHKETIAADHEAKSLVNSQTFEADGQQRVSTIKLYQEVDGKQSGLPRQQSTNLEGSSLKTSPLEGLGNVVGDVKKTDIQKITGVGSGLGSSQSSHNFSRSFETHKELPGKIGSTNLQNASQSWSGGKFTFPKSTEEKLSLSSSFVESGRSETAGINLSIPQVPGGPVGSPIYPKDAATSLAAGNFGRISQSRGQRGSMVAGNVEPISSTLGSQLSMQENFPAKSPNYKSYPPKENYRTPPLQGQLNSEPNLSKQFGNVKEMAKELDTLLQCIEGPGGFRDACTIFQKSSVMELEQGIGTLSENCRMWRSIIDQQHGEIHHLLDKTVQVLARKVYMQGIVKQATDSRYWDLWSRQKLASELELKRRNILKINQDLTNQLIELERHFNAIELNKFGENGGNHVGRRALQSRSGPSRHMQSLHSLHNTMNSQLAAAEQLSECLSKQMTMLSIDSTVKKQNVKKELFEAIGIPYDSASVSSPTISNTSDTPSMKNFLVSSSSANKDQSRRNQLSALKSYEPETVRRRRDSLGQSWANFEPPKTIVKRMVLEEQQKVGVNKPSFSVDKRQFSPHKLEGSAFAYSNNNTTPSAFLYPSRNKGIHEISAKQASYSPSTSLFRWANDPSGPSQSFGSRSPTPHALPGNNLSAFSSLSAPQSSPVVDQSNAMETCNLTNERSSSGVTFVEKSDAVSINETKSTLLSESHLPQTPIISTSLPARTLPLTKKPNEMSNSNGKGTVLAKPTIGSVKQKPVSPGSSFSQSGVSPFSPISAVQPAPSLPGKVFQLDIAKSKGQSCEEVPPSPALSSPFLVPSSSSVIESSAVSQSSLPMPSTVPTSSAAVSFSSQAQETLVPSPSTSLNLTSASLQTSLQSPLGKFSSKSDVNSASQVPPQQSKTPTREFSLKLEPSVPSASKIESSTGLASGNLPSFNSLASHASNVTTMNAKPEQLPADGALQAHPLISGSAAGSKNESLDVTVTQEDEMEEEAPETSQATELRTNPASTPFTMTVPSGELFRPASFNFQSPQPSQPPQSTNLGAFSGGINAGITAQAPARSGFGQLAQIGAGQQALGSVLGAFGQSRQFGAGLPGAGFASASSFTGGFAGGHSAGGFSNAAAGGGFAGVSSTGGGFAGLASAGGGFSGAAPTSGGFAGATGGGFGAFSNPQGSGGFASFGSTGGTGKPPSELFTQMRK* 1686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 183244 227075 + Vvi6g9 Vvi6g9 787586

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g9 1685 MobiDBLite consensus disorder prediction 1116 1158 - -
Vvi6g9 1685 MobiDBLite consensus disorder prediction 1365 1402 - -
Vvi6g9 1685 MobiDBLite consensus disorder prediction 1455 1530 - -
Vvi6g9 1685 MobiDBLite consensus disorder prediction 1216 1233 - -
Vvi6g9 1685 MobiDBLite consensus disorder prediction 1365 1394 - -
Vvi6g9 1685 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP214 ISOFORM X1 13 1685 IPR044694 GO:0006405|GO:0017056
Vvi6g9 1685 SUPERFAMILY Nucleoporin domain 23 424 - -
Vvi6g9 1685 MobiDBLite consensus disorder prediction 1485 1502 - -
Vvi6g9 1685 MobiDBLite consensus disorder prediction 1510 1530 - -
Vvi6g9 1685 MobiDBLite consensus disorder prediction 1662 1685 - -
Vvi6g9 1685 MobiDBLite consensus disorder prediction 1216 1259 - -
Vvi6g9 1685 MobiDBLite consensus disorder prediction 973 1022 - -
Vvi6g9 1685 MobiDBLite consensus disorder prediction 432 460 - -
Vvi6g9 1685 MobiDBLite consensus disorder prediction 718 746 - -
Vvi6g9 1685 MobiDBLite consensus disorder prediction 538 558 - -
Vvi6g9 1685 Coils Coil 855 889 - -
Vvi6g9 1685 MobiDBLite consensus disorder prediction 973 1012 - -
Vvi6g9 1685 MobiDBLite consensus disorder prediction 1243 1259 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g9 K14317 NUP214, CAN; nuclear pore complex protein Nup214 - vvi:100245011 2946.38
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g9 . . . . . . Bma14g00740 . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag0376 . . . . . . . . . Bda07g00774 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009649 1 2 1 1 0 1 1 0 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 32